Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00180
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   2.3  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   5.3  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   5.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   5.3  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   5.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.2  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 355 SSFFFNFITDLINFFVYFIPINI 287
           +++F N    L NFF + +P+ I
Sbjct: 347 TTYFLNTYPHLFNFFEFSVPLAI 369


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 287 DINWDKINKKVDKISDKIEKEATGKS 364
           DIN D   K +D +   ++    GKS
Sbjct: 132 DINMDYFKKCIDPVDKVLQDAKIGKS 157


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 287 DINWDKINKKVDKISDKIEKEATGKS 364
           DIN D   K +D +   ++    GKS
Sbjct: 132 DINMDYFKKCIDPVDKVLQDAKIGKS 157


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 248 STSKSNSCYFSNLHRNETS 192
           STS SNS   +NL +NE S
Sbjct: 327 STSNSNSPSSTNLIQNEAS 345


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 248 STSKSNSCYFSNLHRNETS 192
           STS SNS   +NL +NE S
Sbjct: 116 STSNSNSPSSTNLIQNEAS 134


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 248 STSKSNSCYFSNLHRNETS 192
           STS SNS   +NL +NE S
Sbjct: 116 STSNSNSPSSTNLIQNEAS 134


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 540 SHSSKKCCQKECDSVAR 490
           S+ +K CC + C S  R
Sbjct: 185 SNGNKCCCLRTCSSAKR 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,877
Number of Sequences: 336
Number of extensions: 2313
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)