Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00180
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 28 1.4
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 27 1.9
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.5
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 27 2.5
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 27 2.5
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 26 5.7
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 26 5.7
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 25 7.5
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.5
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 7.5
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.5
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 370 IWGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 260
+WGF SFF FIT+ I F +I F ACN+
Sbjct: 413 LWGFLISFFTPFITNSIGFKYGYI-------FAACNL 442
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 30 N*KSVMAKPKNEDASEEAKKIVDDAKNFIERA 125
N KS++ KPKN +++E K+++ +K+ I+ A
Sbjct: 2 NKKSILKKPKNAQSTQE-KQLITWSKSLIDEA 32
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 346 FFNFITDLINFFVYFIPININVAFLA 269
FFN + N F+ F PI I + F+A
Sbjct: 133 FFNILLRSFNLFIIFSPIIITLPFIA 158
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 54 PKNEDASEEAKKIVDDAKNF 113
P ++A EEAK I ++AKNF
Sbjct: 154 PITQEAVEEAKPITEEAKNF 173
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 370 IWGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 260
+WGF +FF FI+D I F +I F ACN+
Sbjct: 413 LWGFLITFFTPFISDSIGFKYGYI-------FAACNL 442
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 370 IWGFSSSFFFNFITDLINFFVYFIPI 293
IWG FFN + + F+V PI
Sbjct: 480 IWGSCIGLFFNILCLMAQFYVSLFPI 505
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 36 KSVMAKPKNEDASEEAKKIVDD-AKNFIERAIAD 134
K +KP NED E+ K I +D +K E++ +D
Sbjct: 223 KQKSSKPSNEDNVEDKKDITNDSSKETAEKSSSD 256
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 370 IWGFSSSFFFNFITDLINFFVYFIPININV 281
+W F SFF FIT+ I F +I + N+
Sbjct: 413 LWNFLISFFTPFITNSIGFKYGYIFASCNL 442
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +2
Query: 269 SQKGYIDINWDKINKKVDKISDKIEKEATGKSPDWFEKVERF 394
++ Y+D D +N+ + I + K+ + D++EK++ F
Sbjct: 22 NRDSYLDSQSDPLNQNLYNIETENVKDLNIEDVDYYEKLQNF 63
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 185 MDNWFHFYEDWKSSSCWTWRWSHFL-HIASQK 277
+ WF FY D KSS+ T SHF H+ S +
Sbjct: 365 VSQWF-FYRDTKSSATKTNLVSHFFYHVVSNQ 395
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 215 WK-SSSCWTWRWSHFLHIASQK 277
WK S + W RW ++HI S++
Sbjct: 242 WKYSDTPWATRWDKYMHIESRQ 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,785
Number of Sequences: 5004
Number of extensions: 39836
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -