Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00180
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0154 + 5055946-5058721,5058754-5058770                           29   4.5  
03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241...    29   4.5  
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    28   5.9  

>09_02_0154 + 5055946-5058721,5058754-5058770
          Length = 930

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -3

Query: 367 WGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 260
           W  + +   N++T ++N    ++P N+   FL C++
Sbjct: 407 WQLTKNQKLNYVTSILNLSFDYLPANLKNCFLYCSM 442


>03_05_0802 -
           27823213-27823701,27823911-27823959,27824053-27824120,
           27824208-27824276,27824391-27824460,27824556-27824635,
           27824706-27824784,27824949-27825025,27825110-27825176,
           27825285-27825381,27825478-27825574,27825701-27825739,
           27825843-27825907,27826034-27826142,27826275-27826487
          Length = 555

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 224 SSCWTWRWSHFLHIASQKGYIDINWDKINKKVDKISDKIEKEATGKSPDW 373
           S C   + SH L +A + GY+ I +D   +++   S  + K A  K  DW
Sbjct: 68  SFCKAEQISHLLAVADEDGYVGI-YD-TRRRLPSSSSSLGKSAETKMSDW 115


>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 275 KGYIDINWDKINKKVDKISDKIEKEATGKSPDWFEKVERF 394
           K  +DI   ++ K+  ++   +EKE   +S DW  ++ RF
Sbjct: 410 KKELDIRTRRLEKEKMEVQTTLEKEMDRRSDDWSIRLSRF 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,146
Number of Sequences: 37544
Number of extensions: 212505
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)