Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00180
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    28   6.0  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              28   6.0  
SB_34223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 257 LHIASQKGYIDINWDKINKKVDKISDKIEKE 349
           L IA + GYI+INW K+ K  +K+S  +E+E
Sbjct: 79  LQIAHKTGYININWKKVEKDYNKVSRHVERE 109


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 284 IDINWDKINKKVDKISDKIEKEATGKSPDWFEK 382
           +D N + +NK + +  DK+EKE   K   W  K
Sbjct: 77  LDQNAEAVNKALSERVDKLEKEQRAKMDQWETK 109


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 51  KPKNEDASEEAKKIVDDAKNFIERAIADIGKTSA 152
           KPK +D+  E  KI+  +   IE  I D+  T++
Sbjct: 244 KPKGDDSEVEKAKIIQTSARLIESEIKDLPTTTS 277


>SB_34223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 218 KSSSCWTWRWSHFLHIASQKGYIDINWDKINKKVDKISDKIEKEATGKSPD---WFEKVE 388
           + S+C   R +    + S +   +   DK+ +++ K+S+K  KE   K  D   W + + 
Sbjct: 20  RESACVVARVTEAFSVKSLQWQSEPTGDKLREEITKMSEKKAKELFEKDEDRKRWIDSIR 79

Query: 389 RFVDR 403
           + V++
Sbjct: 80  KSVEQ 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,651
Number of Sequences: 59808
Number of extensions: 252981
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)