Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00180
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-5|AAM45362.1|  368|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U64844-4|AAB18307.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF106575-16|AAC78161.2|  334|Caenorhabditis elegans Serpentine r...    28   6.9  
AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    28   6.9  
Z49968-8|CAE17875.1|  144|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine re...    27   9.2  

>U64844-5|AAM45362.1|  368|Caenorhabditis elegans Hypothetical
           protein T22F3.2b protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 486 NTVLQNHILFGSIFCWNGYWSNLRK 560
           N +L NH L  S++ WN  WS LR+
Sbjct: 62  NEILDNHELVSSLYAWN--WSELRE 84


>U64844-4|AAB18307.1|  376|Caenorhabditis elegans Hypothetical
           protein T22F3.2a protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 486 NTVLQNHILFGSIFCWNGYWSNLRK 560
           N +L NH L  S++ WN  WS LR+
Sbjct: 62  NEILDNHELVSSLYAWN--WSELRE 84


>Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical
           protein D2013.5 protein.
          Length = 934

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +2

Query: 233 WTWRWSHFLHIASQKGYIDIN--WDKINKKVDKISDKIEKEATGKSPDWFEKVERF 394
           W   W   L   S   + D N  W++ ++K+  I D    +   K  +W  K E+F
Sbjct: 102 WYEEWKSNLPDLSLPEWFDSNGSWNEFSQKMKGIKDGFGADGQNKWAEWMAKFEQF 157


>AF106575-16|AAC78161.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein3 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 394 KSFHLFKPIWGFSSSFFFNFITDLINFFVYFIPININV 281
           K F  FKP     + FF NF + +  F+V+FI   I V
Sbjct: 170 KRFGTFKPYMWCDNCFFMNFSSKI--FYVFFIVAGIAV 205


>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
           receptor, class z protein20 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 349 FFFNFITDLINFFVYFIPININVAFLACN 263
           F  +++ ++I F  + +PI + +++L CN
Sbjct: 261 FDIDYVLEIIPFDCFLLPIIVQISYLGCN 289


>Z49968-8|CAE17875.1|  144|Caenorhabditis elegans Hypothetical
           protein M110.9 protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +2

Query: 299 DKINKKVDKISDKIEKEATGKSPDWFEKVER 391
           ++INK++DK+ +K++++   +   W  +VE+
Sbjct: 40  EQINKEIDKLVEKLDEKTKQEHKAWKLRVEK 70


>AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 40 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 397 YKSFHLFKPIWGFSSSFFFNFITDLINFFVYF 302
           Y+ +H   PIW F   F F+  T L   FV+F
Sbjct: 116 YRIYHPIIPIWPF---FLFSLSTGLFQDFVFF 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,980,529
Number of Sequences: 27780
Number of extensions: 216140
Number of successful extensions: 778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)