Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00180
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35753.1 68418.m04282 expressed protein 30 1.2
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta... 30 1.6
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta... 30 1.6
At1g69660.1 68414.m08017 meprin and TRAF homology domain-contain... 30 1.6
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 29 2.8
At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containi... 29 2.8
At1g66020.1 68414.m07493 terpene synthase/cyclase family protein... 29 2.8
At4g23950.1 68417.m03444 expressed protein ; expression supporte... 28 4.9
At3g55060.1 68416.m06115 expressed protein contains weak similar... 28 4.9
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ... 28 4.9
At1g72950.1 68414.m08437 disease resistance protein (TIR-NBS cla... 28 6.5
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR... 27 8.6
At3g58430.1 68416.m06512 meprin and TRAF homology domain-contain... 27 8.6
At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi... 27 8.6
>At5g35753.1 68418.m04282 expressed protein
Length = 592
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 181 DAVPKISCLVAEVLPISAMALSIKFLASST 92
D +P++ C+V EVL + + I +L+S T
Sbjct: 391 DGMPRLYCMVREVLSVQPFKIDIAYLSSKT 420
>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 706
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 181 DAVPKISCLVAEVLPISAMALSIKFLASST 92
D +P++ C+V EVL + + I +L+S T
Sbjct: 505 DGMPRLYCVVREVLSVQPFKIDIAYLSSKT 534
>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 706
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 181 DAVPKISCLVAEVLPISAMALSIKFLASST 92
D +P++ C+V EVL + + I +L+S T
Sbjct: 505 DGMPRLYCVVREVLSVQPFKIDIAYLSSKT 534
>At1g69660.1 68414.m08017 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 231
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 215 WKSSSCWTWRWSHFLHIAS-QKGYIDINWDKINKKVD 322
W S W W HFL IA+ +K Y+D D +N +++
Sbjct: 183 WYKESSRGWGWDHFLSIANLRKTYLD-KEDALNVEIE 218
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 236 TWRWSHFL-HIASQKGYIDINWDKINKKVDKISDKIEKEATGKSP 367
T RW L +A+ GY+ NWD ++KI+ I + +P
Sbjct: 1373 TRRWIQALAKVATLAGYVSNNWDNEAVMIEKIATDISNKLNKSTP 1417
>At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 825
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 218 KSSSCWTW-RWSHFLHIASQKGYIDINWDKINKKVDKISDKIEKEATGKSPD 370
K ++W +H +H+ S N D+I +K+++++ +IE+E G PD
Sbjct: 688 KKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIERE--GYKPD 737
>At1g66020.1 68414.m07493 terpene synthase/cyclase family protein
contains Pfam profile: PF01397: Terpene synthase family
Length = 598
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/54 (22%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 242 RWSHFLHIASQKGYIDINWDKIN--KKVDKISDKIEKEATGKSPDWFEKVERFV 397
+W+H +H+ S + Y+++ ++I+ + I +E++AT + +W + +F+
Sbjct: 431 KWAHAVHVPSFEEYMEVGEEEISVCSTLAGIFMCMEQKATKEDYEWLKSRPKFI 484
>At4g23950.1 68417.m03444 expressed protein ; expression supported
by MPSS
Length = 466
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 136 ISAMALSIKFLASSTIFLASSEASSFLGLAITD 38
+ + +S+ F+ +TI L S+ +FLG++ITD
Sbjct: 406 LGVLLISLFFVVLATIRLVSTRLWAFLGMSITD 438
>At3g55060.1 68416.m06115 expressed protein contains weak similarity
to intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae];
expression supported by MPSS
Length = 896
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 287 DINWDKINKKVDKISDKIEKEATGKSPDWFEKVERF 394
D++ ++ K+ ++ +EKE +S +W K+E+F
Sbjct: 387 DLHIQRLEKEKSELQAGLEKELDRRSGEWTSKLEKF 422
>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 463
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 462 IIISLVMTNTVLQNHILFGSIFCWNGYWSN 551
+I+S+++ N V HIL+ S WN W+N
Sbjct: 8 LIVSIIL-NLVFTIHILYYSSTTWNPTWTN 36
>At1g72950.1 68414.m08437 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 379
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 236 TWRWSHFLHIASQKGYIDINWDKINKKVDKISDKIEKE 349
+WR + ++AS G W+ +K V++I+D+I KE
Sbjct: 137 SWRQA-LTNLASISGDCSWKWEDDSKMVEEITDRISKE 173
>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RWSHFL-HIASQKGYIDINWDKINKKVDKISDKI 340
RW + L H+A+ G +NWD K + KI+ +
Sbjct: 128 RWRNALAHVATIAGEHSLNWDNEAKMIQKIATDV 161
>At3g58430.1 68416.m06512 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains weak hit to Pfam PF00917: MATH
domain
Length = 552
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 269 SQKGYIDINWDKINKKVDKISDKIEKEATG 358
S + D++W + KK+D++ DK E+E +G
Sbjct: 480 SPLSFDDVDW--LEKKLDQVKDKKEREQSG 507
>At1g24440.1 68414.m03079 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812
Length = 251
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 176 CIRMDNWFHFYEDWKSSSCWTWRWSHFLHIASQKGYIDINWDK 304
C + +F F W SC R+ F HI K D W++
Sbjct: 46 CSNLAPFFIFLLQWMDFSCLLPRYFDFFHILIYKVRADGRWNR 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,145,819
Number of Sequences: 28952
Number of extensions: 193982
Number of successful extensions: 581
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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