Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00179
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    25   0.44 
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    25   0.44 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.4  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   2.4  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   5.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   5.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   5.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.4  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   5.4  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   5.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.4  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    22   5.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.4  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   5.4  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   5.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.2  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   7.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.5  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   9.5  

>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory
          receptor candidate 62 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 83 QRRFSHALHEYKQAFFWANFGNVS 12
          ++RF H +H Y    F+  F +VS
Sbjct: 19 EKRFPHRIHSYFMVAFYVVFSSVS 42


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory
          receptor candidate 37 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 83 QRRFSHALHEYKQAFFWANFGNVS 12
          ++RF H +H Y    F+  F +VS
Sbjct: 19 EKRFPHRIHSYFMVAFYVVFSSVS 42


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 254 LFQFCQCHYYSKISDVG 204
           +F FC C+Y SK++  G
Sbjct: 269 VFSFCYCYYNSKMTKDG 285


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +2

Query: 110 RPVHICHVA---RKEEILIIKAAKERGVKVTC 196
           RP  I  VA   R+ E L+   AKE G KV C
Sbjct: 610 RPGQIIQVANSLRQYEDLLEYEAKEEGPKVVC 641



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 590 FRKFH*RWNYPFIIQIN 540
           F+  H  WNYP   Q N
Sbjct: 749 FKGLHLDWNYPVCWQSN 765


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 460 IEDLINKFHRNPRKIFTYQNSLTHMLKLIWI 552
           I+ L+N  H+N  K+    NSL  +  L+WI
Sbjct: 230 IKHLVN-LHKNLVKVAKDHNSLYSLHLLLWI 259


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 34  RRRIEIAHALCLTERQIKIW 53


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 248 RRRIEIAHALCLTERQIKIW 267


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 248 RRRIEIAHALCLTERQIKIW 267


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 270 RRRIEIAHALCLTERQIKIW 289


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 248 RRRIEIAHALCLTERQIKIW 267


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 204 RRRIEIAHALCLTERQIKIW 223


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 248 RRRIEIAHALCLTERQIKIW 267


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 36  RRRIEIAHALCLTERQIKIW 55


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 272 RRRIEIAHALCLTERQIKIW 291


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 248 RRRIEIAHALCLTERQIKIW 267


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 185 RRRIEIAHALCLTERQIKIW 204


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 244 RRRIEIAHALCLTERQIKIW 263


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 341 QTMHLILWKKRILRIH 388
           Q  H++ W +R LR+H
Sbjct: 15  QDKHMVHWFRRGLRLH 30


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 451 DLDVQR*VAKAILFLSQGSQVVDSQNSFLPQYEV 350
           +L  ++ VA+A+LF   G + V +  SF+  YE+
Sbjct: 263 ELTDEKIVAQALLFFFAGFETVSTGVSFM-AYEL 295


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 251 RRRIEMAHALCLTERQIKIW 270


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 KRRAKVCPVLCSPEDQAELW 309
           +RR ++   LC  E Q ++W
Sbjct: 33  RRRIEMAHALCLTERQIKIW 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,265
Number of Sequences: 336
Number of extensions: 3469
Number of successful extensions: 25
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)