Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00179
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    65   1e-11
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.6  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.9  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    26   5.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 30/73 (41%), Positives = 47/73 (64%)
 Frame = +2

Query: 17   HFQSWPKKMPVCTHAEREKTAAVILMASLLDRPVHICHVARKEEILIIKAAKERGVKVTC 196
            HF  WP    V T A+    A+++L+ASL +R +HI +V+ K+++ +I  AK+R + VT 
Sbjct: 1648 HFNVWPDTQTVMTDAKSTTLASLLLLASLHNRRIHITNVSSKDDLNLIVLAKQRSLPVTF 1707

Query: 197  EVCPHHLFLNSND 235
            +V  + LFLN ND
Sbjct: 1708 DVSVYSLFLNQND 1720



 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 28/77 (36%), Positives = 48/77 (62%)
 Frame = +1

Query: 277  LCSPEDQAELWRNISIIDVFATDHAPHTVEEKNSENPPPGYPGLETILPLLLNAVHQGRL 456
            L + +DQ E+W  +S ID F+    P  + +        G+ G+   +PLLL AV++GRL
Sbjct: 1727 LPTADDQVEIWNKLSYIDCFSIGSIPSRLAKFVGNTAFTGF-GVREAIPLLLTAVNEGRL 1785

Query: 457  TIEDLINKFHRNPRKIF 507
            T++D++++F+ NP+ IF
Sbjct: 1786 TLKDVVDRFYSNPKAIF 1802


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 351 CMVCGKNINDTYISPKFCLVFRTT*YW-TYFCSPFPILSMSLLFKN 217
           C V  K I +  I+      F  T YW  +F + F  +   LLF+N
Sbjct: 16  CTVVEKCITNLLITTILLCFFNATTYWKLFFGAMFDFIHYQLLFRN 61


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 341 VAKTSMILIFRQSSAWSSGLHNTGHTFARLFQ 246
           +A    I I R  SA  + L N G  FARLFQ
Sbjct: 360 IANRIQICIGRAESA-ENALDNAGEVFARLFQ 390


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 107 DRPVHICHVARKEEILIIKAAKERGVKVTCEVCPHHLFLNSNDIDKI 247
           +RP H C VA++E I+     K+R  K   E     L    + + KI
Sbjct: 39  NRPCHNCFVAKRECIIAGDNRKKRHTKTYVEALESQLANMESTLAKI 85


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 289 EDQAELWRNISIIDVFATDHAPHTVEEKNS 378
           ED   +W N+++   F    A H V  KN+
Sbjct: 179 EDGVSIWHNVTLGSTFKDSGARHPVIRKNA 208


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 460 IEDLINKFHRNPRKIFTYQNSLTHMLKLIWIMNG*FQRQWN 582
           I D+ NKF  +  +I  Y ++ T  L  +W+    F  + N
Sbjct: 712 IYDIPNKFQNSESRIIVYYSNNTLYLSELWLPQRTFSSKLN 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,843
Number of Sequences: 5004
Number of extensions: 56303
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)