Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00179
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1612 + 34773218-34773414,34773655-34773738,34773871-347739...    38   0.008
02_02_0400 + 9836045-9837115,9837474-9838577                           29   3.5  

>04_04_1612 +
           34773218-34773414,34773655-34773738,34773871-34773944,
           34774312-34774388,34774491-34774527,34774691-34774776,
           34775048-34775107,34775216-34775361,34775780-34775906,
           34776164-34776319,34776409-34776519,34776725-34776835,
           34777040-34777138,34777316-34777444
          Length = 497

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +2

Query: 116 VHICHVA-RKEEILIIKAAKERGVKVTCEVCPHHLFLNSNDI 238
           +HI H++  K  + ++K AK+ G +V+ E CPH+L  ++ ++
Sbjct: 280 IHIVHLSDAKTSLGLLKDAKQNGARVSVETCPHYLAFSAEEV 321


>02_02_0400 + 9836045-9837115,9837474-9838577
          Length = 724

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 388 PPGYPGLETILPLLLNAVHQGRLTIEDLINKFHRN 492
           PP YP    I PLLLNA   G   I      FH+N
Sbjct: 396 PPSYPAW--ITPLLLNAADVGTTNIRYYSPYFHKN 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,345,414
Number of Sequences: 37544
Number of extensions: 333812
Number of successful extensions: 813
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)