Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00179
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)             125   3e-29
SB_5794| Best HMM Match : No HMM Matches (HMM E-Value=.)              109   2e-24
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)                     86   2e-17
SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.17 
SB_58019| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_29282| Best HMM Match : Vicilin_N (HMM E-Value=5)                   29   3.6  
SB_36982| Best HMM Match : adh_short (HMM E-Value=1.4e-05)             28   6.2  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   28   8.2  

>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score =  125 bits (302), Expect = 3e-29
 Identities = 52/84 (61%), Positives = 66/84 (78%)
 Frame = +2

Query: 2    TIWQKHFQSWPKKMPVCTHAEREKTAAVILMASLLDRPVHICHVARKEEILIIKAAKERG 181
            TIW KH ++WP  MP+  HAE   TAA++L+A L DRPVHI HVARKEEI++I+AAKERG
Sbjct: 1882 TIWMKHLENWPLHMPIVCHAEGRTTAAILLLAELADRPVHIAHVARKEEIMVIRAAKERG 1941

Query: 182  VKVTCEVCPHHLFLNSNDIDKIGK 253
            + VTCEV PHHLF+  +D  +IG+
Sbjct: 1942 LAVTCEVAPHHLFMTKDDAARIGE 1965



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 262  KVCPVLCSPEDQAELWRNISIIDVFATDH 348
            +V P L + EDQ  LW N+  ID FATDH
Sbjct: 1969 RVKPPLVTAEDQMALWDNMEYIDCFATDH 1997


>SB_5794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/68 (72%), Positives = 55/68 (80%)
 Frame = +1

Query: 262 KVCPVLCSPEDQAELWRNISIIDVFATDHAPHTVEEKNSENPPPGYPGLETILPLLLNAV 441
           +V P L + EDQ  LW N+  ID FATDHAPHT+EEKNS N PPG+PGLET+LPLLL AV
Sbjct: 39  RVKPPLVTAEDQMALWDNMEYIDCFATDHAPHTIEEKNSTNSPPGFPGLETMLPLLLTAV 98

Query: 442 HQGRLTIE 465
           HQGRLTIE
Sbjct: 99  HQGRLTIE 106



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +2

Query: 149 ILIIKAAKERGVKVTCEVCPHHLFLNSNDIDKIGK 253
           I++I+AAKERG+ VTCEV PHHLF+  +D  +IG+
Sbjct: 1   IMVIRAAKERGLAVTCEVAPHHLFMTKDDAARIGE 35


>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
          Length = 563

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 35/62 (56%), Positives = 50/62 (80%)
 Frame = +3

Query: 504 FYLPEQPNTYVEVDLDYEWVIPTSMEFSKSKWTPFAGMKVCGAIHRVTLRGEIAYVEGQI 683
           F LPEQ +TYV+V++  EW IP +M +S+++WTPFAGMKV G++ RV LRGE A ++GQ+
Sbjct: 20  FGLPEQKDTYVDVEIGSEWTIPKAMAYSRAQWTPFAGMKVFGSVRRVVLRGETACIDGQV 79

Query: 684 LV 689
           L+
Sbjct: 80  LL 81


>SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 325 IDVFATDHAPHTVEEKNSE--NPPPGYPGLETILPLLLNAVHQGRLTIEDLINKFHRNPR 498
           I    +DH PH    K +      PG  GLET+LPL L  V Q  L++  LI K    P 
Sbjct: 379 IQAICSDHQPHDPAAKQAPFAATEPGISGLETLLPLGLMLVEQKLLSLSQLIEKLSTAPA 438

Query: 499 KIFTYQ 516
           +I   Q
Sbjct: 439 EILGIQ 444



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 59  AEREKTAAVILMASLLDRPVHICHVARKEEILIIKAAKERGVKVTCEVCPHHLFLNSNDI 238
           AE  + A  +L+        H   ++ +  + ++  A++RG+ +T +V  HHL L   ++
Sbjct: 289 AETVELARCLLLVEQTGVRAHFGQLSCERSVRMVMDARKRGLNITADVAIHHLLLTDENV 348


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +2

Query: 53  THAEREKTAAVILMASLLDR---PVHICHVARKEEILIIKAAKERGVKVTCEVCPHHLFL 223
           T  E  +  A+ ++  L D    P HI H++    +  I++A+  G+ +T E   H+L L
Sbjct: 162 TRPESMENKAIEMVIHLCDHYRVPCHIVHLSSGSALDSIRSARSSGIPLTVETTHHYLSL 221

Query: 224 NSNDI 238
            + ++
Sbjct: 222 TAEEV 226


>SB_58019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 139 SCYVTNVYRPIKERCH*NDSGGFLTLCMSTNR 44
           SC V N+   I+ERC  +DSG  L L   T +
Sbjct: 18  SCTVVNLLDNIRERCGFSDSGNILDLTDQTEK 49


>SB_29282| Best HMM Match : Vicilin_N (HMM E-Value=5)
          Length = 106

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 76  RRCHFNGISP*SACTHLSRSTKRRNINYQSRKRK 177
           RRCH   ++P   CT+  + TK+  I Y+  K K
Sbjct: 10  RRCHIRHLNPQVVCTYGDKCTKQTRI-YRGEKAK 42


>SB_36982| Best HMM Match : adh_short (HMM E-Value=1.4e-05)
          Length = 258

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 436 AVHQGRLTIEDLINKFHRN--PRKIFTYQNSLTHMLKLI 546
           +VH G +   DL  ++HR+  P KIFT + S+  M+K+I
Sbjct: 200 SVHPGTVDT-DLSRRYHRSVDPSKIFTPEYSVECMMKVI 237


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 427 LLNAVHQGRLTIEDLINKFHRNPRKIFTYQNSLTHMLKLIWI 552
           L N VH     ++D+IN+   +PR  F Y +    ++   WI
Sbjct: 747 LANMVHDLTEQLKDMINQKKYDPRDPFLYHDDTLELMTHRWI 788


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,493,380
Number of Sequences: 59808
Number of extensions: 411849
Number of successful extensions: 937
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)