Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00179
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04955.1 68417.m00720 amidohydrolase family protein similar t...    37   0.014
At4g37900.1 68417.m05360 glycine-rich protein                          28   5.1  
At3g14540.1 68416.m01842 terpene synthase/cyclase family protein...    28   6.7  
At5g37175.1 68418.m04463 hypothetical protein                          27   8.9  
At4g01995.1 68417.m00267 expressed protein                             27   8.9  

>At4g04955.1 68417.m00720 amidohydrolase family protein similar to
           SP|P32375 Allantoinase (EC 3.5.2.5) {Saccharomyces
           cerevisiae}; contains Pfam profile PF01979:
           Amidohydrolase family
          Length = 506

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 116 VHICHVARKEEIL-IIKAAKERGVKVTCEVCPHHLFLNSNDI 238
           +HI H++     L +IK AK +G  VT E CPH+L  ++ +I
Sbjct: 288 LHIVHLSDASSSLDLIKEAKGKGDSVTVETCPHYLAFSAEEI 329


>At4g37900.1 68417.m05360 glycine-rich protein 
          Length = 787

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 454 NDLDVQR*VA--KAILFLSQGSQVVDSQNSFLPQYEVHGLWQKHQ 326
           ND+ +Q  VA  KA L+L +G++    +   +P Y++  +W  HQ
Sbjct: 186 NDVFLQEAVARYKAFLYLIKGNRERSIKLFCVPTYDIDLIWHTHQ 230


>At3g14540.1 68416.m01842 terpene synthase/cyclase family protein
           similar to terpene synthase GB:CAA72074 from
           [Arabidopsis thaliana]
          Length = 602

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 263 FARL-FQFCQCHYYSKI 216
           FA+L F FCQCHY  +I
Sbjct: 280 FAKLNFNFCQCHYIQEI 296


>At5g37175.1 68418.m04463 hypothetical protein
          Length = 136

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 573 TLELPIHNPNQLQHMC*AVLVSKNFTRITMKFINKIFNSQTTLM 442
           TL L IH     + +   +L+S NFT  T  FI +  N Q   +
Sbjct: 84  TLNLKIHQKELHEILHDILLLSSNFTVCTFNFILRALNRQADFL 127


>At4g01995.1 68417.m00267 expressed protein
          Length = 258

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 328 DVFATDHAPHTVEEKNSENPPPGYPGLETILPLLL 432
           D F        VEE  S++  PGY GL  ++ LLL
Sbjct: 59  DFFMQSFRNKLVEEVGSDSEKPGYVGLIELVKLLL 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,330,711
Number of Sequences: 28952
Number of extensions: 282959
Number of successful extensions: 744
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)