Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00178
(499 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DA4330 Cluster: PREDICTED: similar to splicing f... 156 2e-37
UniRef50_Q15393 Cluster: Splicing factor 3B subunit 3; n=64; Euk... 156 2e-37
UniRef50_A7RHF3 Cluster: Predicted protein; n=1; Nematostella ve... 133 2e-30
UniRef50_A4RYT7 Cluster: Predicted protein; n=3; Viridiplantae|R... 95 1e-18
UniRef50_Q9UTT2 Cluster: Pre-mRNA-splicing factor rse1; n=17; Di... 93 2e-18
UniRef50_Q5KP25 Cluster: Pre-mRNA-splicing factor RSE1; n=3; Dik... 90 2e-17
UniRef50_Q2H7K6 Cluster: Putative uncharacterized protein; n=1; ... 80 3e-14
UniRef50_Q8I574 Cluster: Splicing factor 3b, subunit 3, 130kD, p... 79 5e-14
UniRef50_A0ED07 Cluster: Chromosome undetermined scaffold_9, who... 74 2e-12
UniRef50_A7ATX1 Cluster: Splicing factor 3b, subunit 3, 130kD, p... 74 2e-12
UniRef50_Q7RIV2 Cluster: Drosophila melanogaster CG13900 gene pr... 72 6e-12
UniRef50_Q54SA7 Cluster: CPSF domain-containing protein; n=1; Di... 70 3e-11
UniRef50_Q4N305 Cluster: Putative uncharacterized protein; n=1; ... 68 1e-10
UniRef50_Q4UAB5 Cluster: Splicing factor 3b subunit, putative; n... 62 5e-09
UniRef50_Q0V0M1 Cluster: Putative uncharacterized protein; n=1; ... 62 5e-09
UniRef50_Q6CAH5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Yar... 57 3e-07
UniRef50_A7QN72 Cluster: Chromosome undetermined scaffold_131, w... 54 2e-06
UniRef50_Q6BYK1 Cluster: Pre-mRNA-splicing factor RSE1; n=2; Sac... 54 2e-06
UniRef50_Q5CHP5 Cluster: CG13900 gene product; n=2; Cryptosporid... 53 4e-06
UniRef50_A5B7Q5 Cluster: Putative uncharacterized protein; n=1; ... 50 2e-05
UniRef50_A5DFJ2 Cluster: Putative uncharacterized protein; n=1; ... 50 3e-05
UniRef50_Q9SF03 Cluster: F26K24.25 protein; n=5; core eudicotyle... 50 4e-05
UniRef50_A5DXW5 Cluster: Putative uncharacterized protein; n=1; ... 49 5e-05
UniRef50_Q5A7S5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Can... 49 7e-05
UniRef50_Q9M0V3 Cluster: DNA damage-binding protein 1a; n=8; Vir... 48 2e-04
UniRef50_Q16531 Cluster: DNA damage-binding protein 1; n=44; cel... 42 0.010
UniRef50_Q9N4C2 Cluster: Probable cleavage and polyadenylation s... 41 0.013
UniRef50_UPI0000499BE9 Cluster: splicing factor 3B subunit 3; n=... 39 0.054
UniRef50_Q9V726-2 Cluster: Isoform B of Q9V726 ; n=4; Diptera|Re... 36 0.38
UniRef50_Q9V726 Cluster: Cleavage and polyadenylation specificit... 36 0.38
UniRef50_Q0VRK6 Cluster: Putative uncharacterized protein; n=1; ... 36 0.51
UniRef50_Q6CXH8 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Klu... 35 1.2
UniRef50_Q0SKE0 Cluster: Receptor-like histidine kinase of 2 com... 34 1.5
UniRef50_A4XCF7 Cluster: Putative uncharacterized protein precur... 33 2.7
UniRef50_UPI0000DA44BE Cluster: PREDICTED: hypothetical protein;... 33 4.7
UniRef50_Q23865 Cluster: RepE; n=2; Dictyostelium discoideum|Rep... 33 4.7
UniRef50_A7SP44 Cluster: Predicted protein; n=1; Nematostella ve... 33 4.7
UniRef50_Q1YV68 Cluster: Putative uncharacterized protein; n=1; ... 32 6.2
UniRef50_Q8NU24 Cluster: Hypothetical membrane protein; n=3; Cor... 32 8.2
UniRef50_Q6CWI6 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 32 8.2
>UniRef50_UPI0000DA4330 Cluster: PREDICTED: similar to splicing
factor 3b, subunit 3; n=1; Rattus norvegicus|Rep:
PREDICTED: similar to splicing factor 3b, subunit 3 -
Rattus norvegicus
Length = 1216
Score = 156 bits (379), Expect = 2e-37
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLAC 181
D+EPEFSSAMPLEEGDTFFF PRPL+NLVLVDE+DSLSPIL C +ADLA EDTPQ+Y+AC
Sbjct: 368 DEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVAC 427
Query: 182 GKGPRSSLRALRHGLEVAEKAVSEL 256
G+GPRSSLR LRHGLEV+E AVSEL
Sbjct: 428 GRGPRSSLRVLRHGLEVSEMAVSEL 452
Score = 120 bits (290), Expect = 1e-26
Identities = 55/66 (83%), Positives = 63/66 (95%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG+PNAVWTVRR+ ++E+D+YIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSC +G
Sbjct: 453 PGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLG 512
Query: 436 NDALVQ 453
+DALVQ
Sbjct: 513 DDALVQ 518
>UniRef50_Q15393 Cluster: Splicing factor 3B subunit 3; n=64;
Eukaryota|Rep: Splicing factor 3B subunit 3 - Homo
sapiens (Human)
Length = 1217
Score = 156 bits (379), Expect = 2e-37
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLAC 181
D+EPEFSSAMPLEEGDTFFF PRPL+NLVLVDE+DSLSPIL C +ADLA EDTPQ+Y+AC
Sbjct: 368 DEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVAC 427
Query: 182 GKGPRSSLRALRHGLEVAEKAVSEL 256
G+GPRSSLR LRHGLEV+E AVSEL
Sbjct: 428 GRGPRSSLRVLRHGLEVSEMAVSEL 452
Score = 120 bits (290), Expect = 1e-26
Identities = 55/66 (83%), Positives = 63/66 (95%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG+PNAVWTVRR+ ++E+D+YIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSC +G
Sbjct: 453 PGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLG 512
Query: 436 NDALVQ 453
+DALVQ
Sbjct: 513 DDALVQ 518
Score = 36.3 bits (80), Expect = 0.38
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 453 VYPDGIRHIRADKRV 497
VYPDGIRHIRADKRV
Sbjct: 519 VYPDGIRHIRADKRV 533
>UniRef50_A7RHF3 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1171
Score = 133 bits (322), Expect = 2e-30
Identities = 62/85 (72%), Positives = 72/85 (84%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLAC 181
DDE EFSS M LEEG TFFF PR L+NLVLVDE++SL+PI+ C +ADLA EDTPQ++ AC
Sbjct: 368 DDELEFSSTMELEEGTTFFFQPRGLKNLVLVDELESLAPIMNCQIADLANEDTPQLFAAC 427
Query: 182 GKGPRSSLRALRHGLEVAEKAVSEL 256
G+G RSSLR LRHGLEV+E AVSEL
Sbjct: 428 GRGSRSSLRVLRHGLEVSEMAVSEL 452
Score = 113 bits (272), Expect = 2e-24
Identities = 50/66 (75%), Positives = 59/66 (89%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG+PNAVWTV+ +E+D+YI+VSF+NATLVLSIGETVEEVTDSGFLGTTPTLSC +G
Sbjct: 453 PGNPNAVWTVKHTTADEFDAYIVVSFINATLVLSIGETVEEVTDSGFLGTTPTLSCSQLG 512
Query: 436 NDALVQ 453
+ALVQ
Sbjct: 513 EEALVQ 518
Score = 35.9 bits (79), Expect = 0.51
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 453 VYPDGIRHIRADKRV 497
+YPDGIRHIRADKRV
Sbjct: 519 IYPDGIRHIRADKRV 533
>UniRef50_A4RYT7 Cluster: Predicted protein; n=3; Viridiplantae|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 1196
Score = 94.7 bits (225), Expect = 1e-18
Identities = 43/66 (65%), Positives = 54/66 (81%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG PNA++TV+++ EEYDSYIIVSF+NATLVLSIG+TV EV DSG LGTT TL M
Sbjct: 452 PGQPNAIFTVKKSSSEEYDSYIIVSFLNATLVLSIGDTVSEVNDSGILGTTTTLQACLMS 511
Query: 436 NDALVQ 453
+++L+Q
Sbjct: 512 DESLLQ 517
Score = 79.4 bits (187), Expect = 4e-14
Identities = 44/88 (50%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Frame = +2
Query: 2 DDEPEFSSA--MPLEEG-DTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVY 172
DD E SSA M EEG + FF PRPL NL +D +DSL P+L +L E+ PQ+Y
Sbjct: 364 DDAVESSSASLMETEEGYEPVFFDPRPLTNLYTIDTIDSLCPVLDMQAHNLTEEEMPQLY 423
Query: 173 LACGKGPRSSLRALRHGLEVAEKAVSEL 256
CG G RSSLR LR G+ + E A+S L
Sbjct: 424 TLCGTGARSSLRILRQGIAMNELAMSPL 451
>UniRef50_Q9UTT2 Cluster: Pre-mRNA-splicing factor rse1; n=17;
Dikarya|Rep: Pre-mRNA-splicing factor rse1 -
Schizosaccharomyces pombe (Fission yeast)
Length = 1206
Score = 93.5 bits (222), Expect = 2e-18
Identities = 41/66 (62%), Positives = 53/66 (80%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG+P A+WT++ N+ + YDSYII+SF N TLVLSIGETVEE++DSGFL + TL+ MG
Sbjct: 478 PGAPIAIWTLKLNQTDVYDSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMG 537
Query: 436 NDALVQ 453
D+LVQ
Sbjct: 538 RDSLVQ 543
Score = 50.0 bits (114), Expect = 3e-05
Identities = 39/92 (42%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = +2
Query: 2 DDEPEFSS----AMPLEEGD-TFFFAPRPLRNLVLVDEMDSLSPILACHV--ADLAGEDT 160
DDE E +S A E G F R L+NL LV+E+ SL + + A +GE
Sbjct: 387 DDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLSLVEEIPSLYSLTDTLLMKAPSSGEAN 446
Query: 161 PQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
Q+Y CG+G SSLR LR GLE E SEL
Sbjct: 447 -QLYTVCGRGSNSSLRQLRRGLETTEIVASEL 477
>UniRef50_Q5KP25 Cluster: Pre-mRNA-splicing factor RSE1; n=3;
Dikarya|Rep: Pre-mRNA-splicing factor RSE1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 1217
Score = 90.2 bits (214), Expect = 2e-17
Identities = 39/66 (59%), Positives = 51/66 (77%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG P VWT++ +D+EYDSYI++SF N TLVLSIGET+EEV D+GFL + PTL+ +G
Sbjct: 472 PGVPTNVWTLKLTEDDEYDSYIVLSFPNGTLVLSIGETIEEVNDTGFLSSGPTLAVQQLG 531
Query: 436 NDALVQ 453
N L+Q
Sbjct: 532 NAGLLQ 537
Score = 85.0 bits (201), Expect = 8e-16
Identities = 47/93 (50%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDT------FFFAPRPLRNLVLVDEMDSLSPILACHVADLAG--ED 157
D E E+SS E G+ FF P+PLRNL+LVD + SL PI HV +L G D
Sbjct: 379 DGEQEWSSTDYPENGNIDGPLPFAFFDPQPLRNLLLVDTVPSLDPITDAHVVNLLGASSD 438
Query: 158 TPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
TPQ+Y ACG+G RS+ R L+HGL+VAE S L
Sbjct: 439 TPQIYAACGRGARSTFRTLKHGLDVAEMVSSPL 471
>UniRef50_Q2H7K6 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 979
Score = 79.8 bits (188), Expect = 3e-14
Identities = 43/86 (50%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLA-GEDTPQVYLA 178
DD+ EF+S + FF P+P NL LV+ ++S++PILA V +L G+D PQ+Y A
Sbjct: 157 DDQVEFNSNRDIAP---VFFDPQPSGNLSLVETIESMNPILASGVVNLREGDDAPQIYSA 213
Query: 179 CGKGPRSSLRALRHGLEVAEKAVSEL 256
CG G RS R LRHGLEV E SEL
Sbjct: 214 CGSGTRSHFRILRHGLEVNEIVASEL 239
Score = 69.7 bits (163), Expect = 3e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG+ +AVWT + +++D+YII++ TLVLSIGE V++V+DSGFL + TL+ +G
Sbjct: 240 PGTVSAVWTTKLTSQDKHDTYIILTSSTDTLVLSIGEEVKQVSDSGFLTSVSTLAIQQIG 299
Query: 436 NDALVQ 453
+D+L Q
Sbjct: 300 DDSLAQ 305
>UniRef50_Q8I574 Cluster: Splicing factor 3b, subunit 3, 130kD,
putative; n=1; Plasmodium falciparum 3D7|Rep: Splicing
factor 3b, subunit 3, 130kD, putative - Plasmodium
falciparum (isolate 3D7)
Length = 1329
Score = 79.0 bits (186), Expect = 5e-14
Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 DDEPEF--SSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYL 175
DD +F +S PL + F L+NL LVD++ SLSPIL + D TPQ+Y
Sbjct: 398 DDNKQFMCTSNHPLGKNAIIAFKTNKLKNLYLVDQIYSLSPILDMKIIDAKNTHTPQIYT 457
Query: 176 ACGKGPRSSLRALRHGLEVAEKAVSEL 256
CG+GPRSSLR L+HGL + E A +EL
Sbjct: 458 LCGRGPRSSLRILQHGLSIEELADNEL 484
Score = 67.3 bits (157), Expect = 2e-10
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG P +WT++++ EYD YI+VSF TL+L IGE+VEEV+D+ L TL + +
Sbjct: 485 PGKPKYIWTIKKDNLSEYDGYIVVSFEGNTLILEIGESVEEVSDTLLLNNVTTLHINILY 544
Query: 436 NDALVQ 453
+++ +Q
Sbjct: 545 DNSFIQ 550
>UniRef50_A0ED07 Cluster: Chromosome undetermined scaffold_9, whole
genome shotgun sequence; n=3; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_9, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1178
Score = 74.1 bits (174), Expect = 2e-12
Identities = 38/79 (48%), Positives = 52/79 (65%)
Frame = +2
Query: 23 SAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSS 202
S+M LEE FF P+ L++L L+ E+++ S I VADLA E PQ+Y+ C G RS+
Sbjct: 371 SSMALEE--QIFFKPQKLKHLSLLQELNNFSCISDLKVADLAKEGNPQIYICCAAGNRST 428
Query: 203 LRALRHGLEVAEKAVSELQ 259
LR LRHGLE+ + A + LQ
Sbjct: 429 LRVLRHGLEITQLANTNLQ 447
Score = 58.8 bits (136), Expect = 6e-08
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = +1
Query: 265 PNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDA 444
P +WT++ ++ YI++S++N TLVL IGE VE+V D+G GT T+ + +D+
Sbjct: 450 PLGIWTLKERYEDPVHKYIVISYINKTLVLKIGEKVEQVHDTGLEGTKQTIHVGTLIDDS 509
Query: 445 LVQYI 459
+Q +
Sbjct: 510 QIQIL 514
>UniRef50_A7ATX1 Cluster: Splicing factor 3b, subunit 3, 130kD,
putative; n=1; Babesia bovis|Rep: Splicing factor 3b,
subunit 3, 130kD, putative - Babesia bovis
Length = 1169
Score = 73.7 bits (173), Expect = 2e-12
Identities = 40/85 (47%), Positives = 51/85 (60%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLAC 181
+++P SS P + F PR +NL LVDE+ SLS I V D+ G Q++L C
Sbjct: 368 ENDPLCSSIHPQGKDAIVAFKPRVNQNLQLVDELSSLSAITDLKVIDVQGLGQQQIFLGC 427
Query: 182 GKGPRSSLRALRHGLEVAEKAVSEL 256
GKG RS+LR LRHGL V E A +EL
Sbjct: 428 GKGERSTLRVLRHGLSVEELADNEL 452
Score = 70.1 bits (164), Expect = 3e-11
Identities = 34/66 (51%), Positives = 41/66 (62%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG P VWTV D YD +I+V F TLVLS+GE VEEVTDS FL + TL MG
Sbjct: 453 PGRPKQVWTVPTGVDSIYDGFILVGFEGNTLVLSVGEAVEEVTDSCFLTSITTLHVSMMG 512
Query: 436 NDALVQ 453
+ + +Q
Sbjct: 513 DGSYIQ 518
>UniRef50_Q7RIV2 Cluster: Drosophila melanogaster CG13900 gene
product; n=10; Plasmodium|Rep: Drosophila melanogaster
CG13900 gene product - Plasmodium yoelii yoelii
Length = 1235
Score = 72.1 bits (169), Expect = 6e-12
Identities = 33/66 (50%), Positives = 45/66 (68%)
Frame = +2
Query: 59 FAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAE 238
F + L+NL LVD++ SLSPI+ + D + PQ+Y CG+GPRSSLR L+HGL + E
Sbjct: 387 FKTQKLKNLYLVDQIYSLSPIVDMKILDAKNSNLPQIYALCGRGPRSSLRILQHGLSIEE 446
Query: 239 KAVSEL 256
A +EL
Sbjct: 447 LANNEL 452
Score = 69.7 bits (163), Expect = 3e-11
Identities = 31/66 (46%), Positives = 43/66 (65%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG P +WTV+++ EYD YIIVSF TL+L IGETVEEV DS L T+ + +
Sbjct: 453 PGKPRYIWTVKKDNSSEYDGYIIVSFEGNTLILEIGETVEEVYDSLLLTNVTTIHINLLY 512
Query: 436 NDALVQ 453
+++ +Q
Sbjct: 513 DNSFIQ 518
>UniRef50_Q54SA7 Cluster: CPSF domain-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: CPSF domain-containing
protein - Dictyostelium discoideum AX4
Length = 1256
Score = 70.1 bits (164), Expect = 3e-11
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Frame = +1
Query: 256 PGSPNAVWTVRR----NKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSC 423
PG P+ +WTV + N ++ D YI+VSFV T VLS+G+T++E +SG L TT TL
Sbjct: 466 PGVPSGIWTVPKSTSPNAIDQTDKYIVVSFVGTTSVLSVGDTIQENHESGILETTTTLLV 525
Query: 424 HAMGNDALVQ 453
+MG+DA++Q
Sbjct: 526 KSMGDDAIIQ 535
Score = 60.1 bits (139), Expect = 3e-08
Identities = 38/93 (40%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Frame = +2
Query: 5 DEPEFSSAMPLEEGDT-FFFAPR--------PLRNLVLVDEMDSLSPILACHVADLAGED 157
DE E A LE+ D +F PR L+NL + SLSPI+ V DL E+
Sbjct: 373 DEEEEGQAKRLEDKDGHLWFTPRNSCGTKMEELKNLEPTSHLSSLSPIIDFKVLDLVREE 432
Query: 158 TPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
PQ+Y CG G SSL+ LRHGL V + L
Sbjct: 433 NPQLYSLCGTGLNSSLKVLRHGLSVTTITTANL 465
>UniRef50_Q4N305 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 1231
Score = 67.7 bits (158), Expect = 1e-10
Identities = 37/62 (59%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTL-SCHAM 432
PG P AV+T++ + + YD YII+SF TLVLSIGE VEEVTDS FL + TL SCH M
Sbjct: 455 PGRPKAVFTIK-SLESNYDEYIIISFQGNTLVLSIGEAVEEVTDSFFLTSITTLHSCH-M 512
Query: 433 GN 438
G+
Sbjct: 513 GS 514
Score = 52.8 bits (121), Expect = 4e-06
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = +2
Query: 59 FAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAE 238
F PR L+NL +VD M+S++ + V D+ G + +++ACG+ S L+ LR+G E
Sbjct: 389 FKPRKLQNLAVVDRMNSMALAVDMKVVDVLGLNNYDIFVACGRWYDSRLKCLRYGFNTEE 448
Query: 239 KAVSEL 256
A +EL
Sbjct: 449 LAFNEL 454
>UniRef50_Q4UAB5 Cluster: Splicing factor 3b subunit, putative; n=1;
Theileria annulata|Rep: Splicing factor 3b subunit,
putative - Theileria annulata
Length = 1340
Score = 62.5 bits (145), Expect = 5e-09
Identities = 31/56 (55%), Positives = 39/56 (69%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSC 423
PG P V+T++ + + +D YII+SF TLVLSIGE VEEVTDS FL + TL C
Sbjct: 508 PGRPKHVFTIK-SLESNFDEYIIISFQGNTLVLSIGEAVEEVTDSFFLTSITTLHC 562
Score = 57.2 bits (132), Expect = 2e-07
Identities = 27/66 (40%), Positives = 41/66 (62%)
Frame = +2
Query: 59 FAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAE 238
F PR L+NLV+VD M S+ ++ VAD+ G + +++ACG+ S L+ LR+G E
Sbjct: 442 FKPRVLQNLVVVDRMSSMGLVVDMKVADVMGLNNYDIFVACGRWYNSRLKCLRYGFNTEE 501
Query: 239 KAVSEL 256
A +EL
Sbjct: 502 LAFNEL 507
>UniRef50_Q0V0M1 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1273
Score = 62.5 bits (145), Expect = 5e-09
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +2
Query: 5 DEPEFSSAM-PLEEGDTF---FFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVY 172
D+P F S P++ F FF PR L NL V+ M SL+PI+ +A+ ED PQ+Y
Sbjct: 378 DDPMFESGQFPVDPEAVFAPPFFKPRALTNLTAVETMPSLNPIMGMEIANPMLEDAPQIY 437
Query: 173 LACGKGPRSSLRALRHGLEVAEKAVSEL 256
G G RS+ R R+ LEV + S L
Sbjct: 438 TINGAGGRSTFRTTRNALEVLDLIESPL 465
Score = 57.2 bits (132), Expect = 2e-07
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
P + + VWT + ++E D+ I++ + TLVL IGE VEE +++GF+ T TL G
Sbjct: 466 PQNASDVWTTKLTLEDETDTLIVLCLHSRTLVLKIGEDVEEASNTGFMADTNTLGVQQFG 525
Query: 436 NDALVQ 453
D ++Q
Sbjct: 526 EDCIIQ 531
>UniRef50_Q6CAH5 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Yarrowia lipolytica|Rep: Pre-mRNA-splicing factor RSE1 -
Yarrowia lipolytica (Candida lipolytica)
Length = 1143
Score = 56.8 bits (131), Expect = 3e-07
Identities = 27/61 (44%), Positives = 38/61 (62%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
P P+ +WT+R D YI++S+ NATLVL IG++V E T SG PTL C ++G
Sbjct: 453 PEPPSKLWTMRDGAGS--DKYIVLSYANATLVLEIGDSVVETTSSGLTLDKPTLHCGSVG 510
Query: 436 N 438
+
Sbjct: 511 S 511
>UniRef50_A7QN72 Cluster: Chromosome undetermined scaffold_131,
whole genome shotgun sequence; n=6; core
eudicotyledons|Rep: Chromosome undetermined
scaffold_131, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 327
Score = 54.0 bits (124), Expect = 2e-06
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +1
Query: 322 IVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQ 453
+VSF NATL+ SIG+ VE+V+DSGFL TT +L+ +G+D+L+Q
Sbjct: 25 VVSFANATLMPSIGDEVEKVSDSGFLDTTLSLAVSLIGDDSLMQ 68
>UniRef50_Q6BYK1 Cluster: Pre-mRNA-splicing factor RSE1; n=2;
Saccharomycetaceae|Rep: Pre-mRNA-splicing factor RSE1 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 1256
Score = 54.0 bits (124), Expect = 2e-06
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFV--NATLVLSIGETVEEVTDSGFLGTTPTLSCHA 429
P P A+ T R + D Y+++S + TLVLSIGE VEEV DS F+ PT++
Sbjct: 465 PIKPTAIHTTRIFAESANDEYLVISSTLSSQTLVLSIGEVVEEVNDSQFVTNEPTINVQQ 524
Query: 430 MGNDALVQ 453
+G ++VQ
Sbjct: 525 VGKSSVVQ 532
>UniRef50_Q5CHP5 Cluster: CG13900 gene product; n=2;
Cryptosporidium|Rep: CG13900 gene product -
Cryptosporidium hominis
Length = 1318
Score = 52.8 bits (121), Expect = 4e-06
Identities = 27/67 (40%), Positives = 38/67 (56%)
Frame = +2
Query: 56 FFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVA 235
+F PR + + +E+ SLSPI V D + TPQ+ CG+GPRS+LR +G V
Sbjct: 381 YFRPRNCQCIRKSEEILSLSPITDIKVIDTNNDGTPQIVATCGRGPRSTLRVCSYGKNVE 440
Query: 236 EKAVSEL 256
E A + L
Sbjct: 441 EIAENPL 447
Score = 40.7 bits (91), Expect = 0.018
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKD-------------EEYDSYIIVSFVNATLVLSIGETVEEVTDSGF 396
PG P +WT++ D + YII+SF++ +LVL+IGE VEE D+ F
Sbjct: 448 PGRPRCIWTLKNGIDPSLSGSQAEAAILDNIHHYIIISFIDRSLVLTIGEHVEETNDTLF 507
Query: 397 LGTTPTLSCHAM 432
T+ +M
Sbjct: 508 TLNETTMYAASM 519
>UniRef50_A5B7Q5 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 1298
Score = 50.4 bits (115), Expect = 2e-05
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 277 WTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCHAMGNDALVQ 453
WTV+ + Y S++++SFV T VLS+G + +VTDS GF TL+C + + LVQ
Sbjct: 561 WTVKMKVIDSYHSFLVLSFVEETRVLSVGLSFTDVTDSVGFQPDVSTLACGVVDDGLLVQ 620
Score = 41.5 bits (93), Expect = 0.010
Identities = 30/102 (29%), Positives = 51/102 (50%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQD 262
LV + +++PIL V D E+ Q++ CG P SLR +R G+ V EK +
Sbjct: 495 LVYRSPIQNIAPILDMSVVDCHDEEHDQMFACCGVTPEGSLRIIRSGISV-EKLLRTAPI 553
Query: 263 HRMLFGQFDEIKMRNTILTSLCHSLMPHLFFPSVRLLKKSLT 388
++ + G + +KM+ ++ S HS + F R+L L+
Sbjct: 554 YQGITGTW-TVKMK--VIDSY-HSFLVLSFVEETRVLSVGLS 591
>UniRef50_A5DFJ2 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1206
Score = 50.0 bits (114), Expect = 3e-05
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFV--NATLVLSIGETVEEVTDSGFLGTTPTLSCHA 429
P +V+T R + + + D Y+++S + TLVL+IGE VEEV DS F+ PT+
Sbjct: 456 PMIATSVFTTRLSAESKNDEYMVISSSASSKTLVLAIGEVVEEVQDSSFVTDQPTIGVQQ 515
Query: 430 MGNDALVQ 453
+G +L+Q
Sbjct: 516 VGLKSLIQ 523
>UniRef50_Q9SF03 Cluster: F26K24.25 protein; n=5; core
eudicotyledons|Rep: F26K24.25 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1331
Score = 49.6 bits (113), Expect = 4e-05
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 277 WTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCHAMGNDALVQ 453
WTV+ + Y S++++SFV T VLS+G + ++VTDS GF T +C + + LVQ
Sbjct: 498 WTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVADGLLVQ 557
Score = 44.0 bits (99), Expect = 0.002
Identities = 29/99 (29%), Positives = 49/99 (49%)
Frame = +2
Query: 92 VDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHRM 271
+ + +++PIL V D E Q++ CG P SLR +R G+ V EK + ++
Sbjct: 435 MSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINV-EKLLKTAPVYQG 493
Query: 272 LFGQFDEIKMRNTILTSLCHSLMPHLFFPSVRLLKKSLT 388
+ G + +KM+ LT + HS + F R+L L+
Sbjct: 494 ITGTW-TVKMK---LTDVYHSFLVLSFVEETRVLSVGLS 528
>UniRef50_A5DXW5 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1223
Score = 49.2 bits (112), Expect = 5e-05
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +1
Query: 262 SPNAVWTVRRNKDEEYDSYIIVSFV--NATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
+P V+T + ++D D Y++ + + TLV SIGE++E+VTDS F+ PT++ +G
Sbjct: 449 TPTNVFTTKLSEDSPNDEYLVFTSTLSSETLVFSIGESLEDVTDSKFVLDQPTIAVQQVG 508
Query: 436 NDALVQ 453
++VQ
Sbjct: 509 KASVVQ 514
>UniRef50_Q5A7S5 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Candida albicans|Rep: Pre-mRNA-splicing factor RSE1 -
Candida albicans (Yeast)
Length = 1219
Score = 48.8 bits (111), Expect = 7e-05
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVS--FVNATLVLSIGETVEEVTDSGFLGTTPTLSCHA 429
P +P ++T + + + D Y+++S + TLVLSIGE VE+V DS F+ PT++
Sbjct: 479 PITPTDIFTTKLSLESANDEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIAVQQ 538
Query: 430 MGNDALVQ 453
+G ++VQ
Sbjct: 539 VGIASVVQ 546
>UniRef50_Q9M0V3 Cluster: DNA damage-binding protein 1a; n=8;
Viridiplantae|Rep: DNA damage-binding protein 1a -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1088
Score = 47.6 bits (108), Expect = 2e-04
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +1
Query: 274 VWTVRRNKDEEYDSYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDAL 447
+W+++ + DE +D++++VSF++ T L +++ + +EE GFL TL CH + L
Sbjct: 402 MWSLKSSIDEAFDTFLVVSFISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQL 461
Query: 448 VQ 453
VQ
Sbjct: 462 VQ 463
Score = 32.7 bits (71), Expect = 4.7
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 107 SLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQ 259
+L PI+ V DL + QV G SLR +R+G+ + E+A ELQ
Sbjct: 347 NLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQ 397
>UniRef50_Q16531 Cluster: DNA damage-binding protein 1; n=44;
cellular organisms|Rep: DNA damage-binding protein 1 -
Homo sapiens (Human)
Length = 1140
Score = 41.5 bits (93), Expect = 0.010
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 IRAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
I PG +W +R + + E D +++SFV T VL + GE VEE GF+ T C
Sbjct: 402 IDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFC 460
Query: 424 HAMGNDALVQ 453
+ + L+Q
Sbjct: 461 GNVAHQQLIQ 470
>UniRef50_Q9N4C2 Cluster: Probable cleavage and polyadenylation
specificity factor subunit 1; n=2; Caenorhabditis|Rep:
Probable cleavage and polyadenylation specificity factor
subunit 1 - Caenorhabditis elegans
Length = 1454
Score = 41.1 bits (92), Expect = 0.013
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +1
Query: 274 VWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDAL 447
+W V R ++E + Y+IVS V +TL+L +GE + E+ + F+ PT++ + AL
Sbjct: 514 LWAVGRKENESH-KYLIVSRVRSTLILELGEELVELEEQLFVTGEPTVAAGELSQGAL 570
>UniRef50_UPI0000499BE9 Cluster: splicing factor 3B subunit 3; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: splicing factor 3B
subunit 3 - Entamoeba histolytica HM-1:IMSS
Length = 1145
Score = 39.1 bits (87), Expect = 0.054
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +2
Query: 26 AMPLE-EGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADL-AGEDTPQVYLACGKGPRS 199
++P E +G F + + NL + SL+P++ VA + +DT ++Y CGKG +S
Sbjct: 365 SIPFEKDGRLEFERHKEILNLEEIYRFKSLAPLIDLKVAPATSSQDTTKMYAFCGKGNQS 424
Query: 200 SLRALRHGLEVAEKAVSEL 256
+++ L++ L + EL
Sbjct: 425 TIKILKNQLNTLDAVEIEL 443
>UniRef50_Q9V726-2 Cluster: Isoform B of Q9V726 ; n=4; Diptera|Rep:
Isoform B of Q9V726 - Drosophila melanogaster (Fruit
fly)
Length = 1420
Score = 36.3 bits (80), Expect = 0.38
Identities = 15/57 (26%), Positives = 35/57 (61%)
Frame = +1
Query: 280 TVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALV 450
T + ++++++D ++++S N+TLVL G+ + E+ ++GF PT+ +G +
Sbjct: 536 TKKSSRNDQHD-FMLLSQRNSTLVLQTGQEINEIENTGFTVNQPTIFVGNLGQQRFI 591
>UniRef50_Q9V726 Cluster: Cleavage and polyadenylation specificity
factor subunit 1; n=6; Coelomata|Rep: Cleavage and
polyadenylation specificity factor subunit 1 -
Drosophila melanogaster (Fruit fly)
Length = 1455
Score = 36.3 bits (80), Expect = 0.38
Identities = 15/57 (26%), Positives = 35/57 (61%)
Frame = +1
Query: 280 TVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALV 450
T + ++++++D ++++S N+TLVL G+ + E+ ++GF PT+ +G +
Sbjct: 571 TKKSSRNDQHD-FMLLSQRNSTLVLQTGQEINEIENTGFTVNQPTIFVGNLGQQRFI 626
>UniRef50_Q0VRK6 Cluster: Putative uncharacterized protein; n=1;
Alcanivorax borkumensis SK2|Rep: Putative
uncharacterized protein - Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573)
Length = 400
Score = 35.9 bits (79), Expect = 0.51
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -3
Query: 251 LIQPFQQLQDHVLVL*GRIVGLSHMPSKLAEYLPQLNLPHGKLILVTKNPFHLPVLNSS 75
LIQ Q+ Q+ L L GR + + + LA+ +LN P G L+++ N H P + S
Sbjct: 181 LIQQQQKQQEQALDLAGRREHMYQVAATLADQAHELNTPLGTLVMLADNLIHAPEMPDS 239
>UniRef50_Q6CXH8 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Kluyveromyces lactis|Rep: Pre-mRNA-splicing factor RSE1
- Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 1269
Score = 34.7 bits (76), Expect = 1.2
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGE-TVEEV-TDSG-FLGTTPTLSCH 426
P P+ +WTVR K+E + S I +S +T +L I E TVE+ DS F+ P+L
Sbjct: 474 PRIPSKLWTVRIPKNETH-SLIFLSMETSTTILKIHEGTVEDFGGDSNPFILNKPSLFVG 532
Query: 427 AMGNDALVQ 453
AM +++Q
Sbjct: 533 AMVQRSIIQ 541
>UniRef50_Q0SKE0 Cluster: Receptor-like histidine kinase of 2
component system; n=2; Nocardiaceae|Rep: Receptor-like
histidine kinase of 2 component system - Rhodococcus sp.
(strain RHA1)
Length = 389
Score = 34.3 bits (75), Expect = 1.5
Identities = 28/95 (29%), Positives = 42/95 (44%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLAC 181
DD P+ +A D A P+ L L E+D +SP ++ V L E V
Sbjct: 256 DDMPQHGTAGLARVVDMMRSAGLPVE-LELTGELDDISPAVSLGVHRLVQESLTNVLRHA 314
Query: 182 GKGPRSSLRALRHGLEVAEKAVSELQDHRMLFGQF 286
G+ PR+ +R R +V + E+ D+ GQF
Sbjct: 315 GERPRAKVRVRRRETDV----LVEITDNGNSSGQF 345
>UniRef50_A4XCF7 Cluster: Putative uncharacterized protein
precursor; n=1; Salinispora tropica CNB-440|Rep:
Putative uncharacterized protein precursor - Salinispora
tropica CNB-440
Length = 828
Score = 33.5 bits (73), Expect = 2.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 14 EFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSL---SPILACHVADLAGEDTPQVY 172
E ++A G T A RP R +V + DS SP+LA HV D+A D +++
Sbjct: 588 ELAAARGWTVGSTATLAGRPFRVAAVVTDKDSTMAGSPVLAGHVVDVAAADFARLF 643
>UniRef50_UPI0000DA44BE Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 847
Score = 32.7 bits (71), Expect = 4.7
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = -2
Query: 252 SDTAFSATSRPCLSALREDRGPFPHAK*TCGVSSPAKSATWQANIGDKESISSTSTK 82
+ ++ S+TS C+S+ +G P VS P+ + W+A I D +++ S+S +
Sbjct: 784 ASSSSSSTSELCVSSPHSLKGSSPPLSDLSSVSGPSPNTLWRALIPDLDNLHSSSER 840
>UniRef50_Q23865 Cluster: RepE; n=2; Dictyostelium discoideum|Rep:
RepE - Dictyostelium discoideum (Slime mold)
Length = 1139
Score = 32.7 bits (71), Expect = 4.7
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 310 DSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
D Y+I SF+ T VLS GE +EE G TL C
Sbjct: 432 DRYLITSFIECTKVLSFQGEEIEETEFEGLESNCSTLYC 470
Score = 31.9 bits (69), Expect = 8.2
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +2
Query: 92 VDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHRM 271
++ ++ P++ V D + Q+ G SLR +R+G+ +AE+A EL+ +
Sbjct: 339 LEAFTNIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSLRIIRNGIGIAEQASIELEGIKG 398
Query: 272 LF 277
+F
Sbjct: 399 IF 400
>UniRef50_A7SP44 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1420
Score = 32.7 bits (71), Expect = 4.7
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 298 DEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQYILMV 468
+E+Y S++I+S +++++L + + EV SGF T+ GN + YIL V
Sbjct: 560 NEKYHSFLILSREDSSMILKTEQEIMEVDQSGFSTQCATIYAGNFGNGS---YILQV 613
>UniRef50_Q1YV68 Cluster: Putative uncharacterized protein; n=1;
gamma proteobacterium HTCC2207|Rep: Putative
uncharacterized protein - gamma proteobacterium HTCC2207
Length = 689
Score = 32.3 bits (70), Expect = 6.2
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 173 SKLAEYLPQLNLPHGKLILVTKNP-FHLPVLNSSKVLVQKRMCR 45
+KLAE PQ+ LP G + VT P HL + + + Q+RM R
Sbjct: 172 NKLAENTPQVGLPKGDTLPVTAKPEIHLAIPSDKFLTDQQRMQR 215
>UniRef50_Q8NU24 Cluster: Hypothetical membrane protein; n=3;
Corynebacterium glutamicum|Rep: Hypothetical membrane
protein - Corynebacterium glutamicum (Brevibacterium
flavum)
Length = 647
Score = 31.9 bits (69), Expect = 8.2
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLS 420
PG NA + N DE YD +++ +ATL L++ EVT SGF G P LS
Sbjct: 248 PGQDNAFLRLNGNADELYDQARLLT--DATLPLAVD---TEVTASGF-GDVPNLS 296
>UniRef50_Q6CWI6 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 383
Score = 31.9 bits (69), Expect = 8.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 207 LREDRGPFPHAK*T-CGVSSPAKSATWQANIGDKESISSTSTKFLK 73
LR+D F T CG++S KS W DK +I ST TK+++
Sbjct: 253 LRKDYKEFNFNPETRCGIASVVKSIQWIERRFDKANIESTCTKYIE 298
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,322,753
Number of Sequences: 1657284
Number of extensions: 10618594
Number of successful extensions: 29336
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 28258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29309
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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