Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00178
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 93 2e-20
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 29 0.39
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo... 28 0.90
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 1.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 2.7
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 26 2.7
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 3.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 3.6
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 4.8
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 6.3
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 8.4
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 25 8.4
SPBC36.10 |||mitochondrial intermembrane space protein sorting p... 25 8.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.4
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 93.5 bits (222), Expect = 2e-20
Identities = 41/66 (62%), Positives = 53/66 (80%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG+P A+WT++ N+ + YDSYII+SF N TLVLSIGETVEE++DSGFL + TL+ MG
Sbjct: 478 PGAPIAIWTLKLNQTDVYDSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMG 537
Query: 436 NDALVQ 453
D+LVQ
Sbjct: 538 RDSLVQ 543
Score = 50.0 bits (114), Expect = 2e-07
Identities = 39/92 (42%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = +2
Query: 2 DDEPEFSS----AMPLEEGD-TFFFAPRPLRNLVLVDEMDSLSPILACHV--ADLAGEDT 160
DDE E +S A E G F R L+NL LV+E+ SL + + A +GE
Sbjct: 387 DDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLSLVEEIPSLYSLTDTLLMKAPSSGEAN 446
Query: 161 PQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
Q+Y CG+G SSLR LR GLE E SEL
Sbjct: 447 -QLYTVCGRGSNSSLRQLRRGLETTEIVASEL 477
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 29.1 bits (62), Expect = 0.39
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -3
Query: 383 VTSSTVSPMERTSVALTNDTMM*ESYSSSLFRR----TVQTAFGDPGALIQPFQQLQDHV 216
+TS T+SP++ L +T+M ESY SL R V T D A+ F+ D
Sbjct: 455 ITSGTLSPLDMYPKMLQFNTVMQESYGMSLARNCFLPMVVTRGSDQVAISSKFEARNDPS 514
Query: 215 LV 210
+V
Sbjct: 515 VV 516
>SPCC1739.05 |set5||histone lysine methyltransferase Set5
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 0.90
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 179 CGKGPRSSLRALRHGLEVAEKAVSELQDHRMLFGQFDEIKMRNTILTSLCH 331
C PR +LRALRH + +A + +LFG+ D I + + + H
Sbjct: 196 CIVNPRGALRALRHRIHIAHE--------ELLFGRLDIIALLDAFRLCVIH 238
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 304 EYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLS 420
E ++Y+++S + + GET +EV S F + TL+
Sbjct: 585 ELETYLVLSKEKESFIFLAGETFDEVQHSDFSKDSKTLN 623
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.6
Identities = 23/97 (23%), Positives = 41/97 (42%)
Frame = -2
Query: 291 SSNCPNSIR*SWSSDTAFSATSRPCLSALREDRGPFPHAK*TCGVSSPAKSATWQANIGD 112
SS+ P+S S + ++ S +S P S+ + + +S + S++ +
Sbjct: 218 SSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSS 277
Query: 111 KESISSTSTKFLKGLGAKKNVSPSSRGIAELNSGSSS 1
S S TST + + SP+S +S SSS
Sbjct: 278 SSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 262 SPNAVWTVRRNKDEEYDSYIIVS----FVNATLVLSIG 363
SP+ W++ N DE+YD+ ++ S F TL LS G
Sbjct: 525 SPSPGWSLPTNVDEDYDNVLLDSLKFYFKLLTLKLSSG 562
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +2
Query: 245 VSELQDHRMLFGQFDEIKMRNTILTSLCHSLMPHLFFPSVRLLKKSLTQDFWELHLH 415
VS L + R +F +EI ++ + + + +L F + + +W+LH H
Sbjct: 27 VSRLPESRFVFSPKEEINCQSLLQGPELKTALDNLNFIHKQKFEHQFRHGYWKLHPH 83
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 3.6
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 156 SSPAKSAT--WQANIGDKESISSTSTKFLK-GLGAKK 55
SSP KS + W A KESISS++ +K L A+K
Sbjct: 149 SSPFKSLSQYWNAAYNKKESISSSTNSNIKLHLAARK 185
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 3.6
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 159 VSSPAKSATWQANIGDKESISSTSTKFLKGLGAKKNVSPSSRGIAELNSGSSS 1
VSS + S+T ++ S SST+T + + S SS + +S SSS
Sbjct: 127 VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSS 179
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 233 AEKAVSELQDHRMLFGQFDEIKMRNTILTSLCHSLMPHLFFPSVRLLKKSL 385
A++ ++ R L G+FD+ N++L +SL PSV L +S+
Sbjct: 83 AKRRRGRIEIERHLLGEFDDNVGSNSLLDVPLYSLEAEPLSPSVMLEDESM 133
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 6.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Frame = +1
Query: 301 EEYDSYIIVSFVNAT---LVLSIGETVEE---VTDSGFLGT 405
EE+DSYI++ ++NA + GE E+ V + G LGT
Sbjct: 412 EEWDSYILMRYINAVPSQNYILKGERPEKFDVVDEIGILGT 452
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 381 DFFNSLTDGKNKCGIN--E*HNDVRIVFLIFI 292
DF NSL++ K K IN + HN + + +F+
Sbjct: 523 DFSNSLSENKTKDSINAIDVHNSEQNLLAVFV 554
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 8.4
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 485 STNMSYTIRIYCTRASLPIA*QLSVGVVPKNPESVTSSTVSPMERTSVALT 333
+ N SY IY T+ S A Q + +V NP +T PM ++AL+
Sbjct: 123 TNNESY---IYNTQIS---AAQFIIDMVKANPNEITIVAAGPMTNLAIALS 167
>SPBC36.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 337 NATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQYILMV*D 474
+AT V+++ +V D+G L T ++CH AL ++IL + D
Sbjct: 29 HATHVIAVDTLDRKVLDNGVLYTERLITCH----QALPRWILKLID 70
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 404 VPKNPESVTSSTVSPMERTSVALTNDTMM*ESYSSSL 294
+P S T + SP+ TS + T T + SSSL
Sbjct: 207 IPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSL 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,899
Number of Sequences: 5004
Number of extensions: 47216
Number of successful extensions: 142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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