Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00178
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 86 2e-17
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 48 4e-06
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 47 7e-06
02_05_1214 + 34976814-34979813 33 0.17
06_01_0220 - 1673657-1675765 32 0.22
11_06_0703 + 26444128-26446215,26446525-26447226 30 0.90
05_04_0445 - 21316412-21317162,21317253-21317385,21317634-213177... 29 2.1
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 29 2.1
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 29 2.7
11_06_0706 + 26460400-26462254,26462499-26462562,26462929-264629... 28 3.6
11_06_0697 + 26371193-26371397,26371562-26374254 28 3.6
11_01_0405 + 3079275-3079622,3079816-3079903,3081411-3081543,308... 28 3.6
06_01_1009 - 7859357-7859405,7860476-7860660,7860747-7860821,786... 28 3.6
04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251 27 6.3
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 85.8 bits (203), Expect = 2e-17
Identities = 38/66 (57%), Positives = 52/66 (78%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
P P AVWTV++N ++ +D+YI+VSF N TLVLSIGET+EEV+DS FL TT +L+ +G
Sbjct: 467 PAEPIAVWTVKKNINDMFDAYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVSLLG 526
Query: 436 NDALVQ 453
D+L+Q
Sbjct: 527 EDSLMQ 532
Score = 85.4 bits (202), Expect = 2e-17
Identities = 45/88 (51%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTF---FFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVY 172
D + E SSA +E + F FF PR L+NL +DE++SL PI+ VA+L E+TPQV+
Sbjct: 379 DVDVESSSATLMETDEGFQPVFFQPRALKNLYRIDEIESLMPIMDMRVANLFDEETPQVF 438
Query: 173 LACGKGPRSSLRALRHGLEVAEKAVSEL 256
ACG+GPRS+LR LR GL ++E A S L
Sbjct: 439 TACGRGPRSTLRILRPGLAISEMARSML 466
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 453 VYPDGIRHIRADKRV 497
V+P+GIRHIR D RV
Sbjct: 533 VHPNGIRHIREDGRV 547
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 274 VWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDS-GFLGTTPTLSCHAMGNDALV 450
+WT+R + + Y S++++SFV T +LS+G + ++ D+ GF TL+C + + LV
Sbjct: 536 LWTLRMKRTDAYHSFLVLSFVEETRILSVGLSFNDICDAVGFQTDVCTLACGLVADGLLV 595
Query: 451 Q 453
Q
Sbjct: 596 Q 596
Score = 41.5 bits (93), Expect = 4e-04
Identities = 30/102 (29%), Positives = 50/102 (49%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQD 262
LV + +++PIL +AD GE Q++ CG P SLR +R+G+ V EK +
Sbjct: 471 LVHKSAIQNVAPILDLAIADHHGEKQDQMFACCGMCPEGSLRVIRNGVNV-EKLLRTDPI 529
Query: 263 HRMLFGQFDEIKMRNTILTSLCHSLMPHLFFPSVRLLKKSLT 388
+ + G + ++M+ T HS + F R+L L+
Sbjct: 530 YHGVTGLW-TLRMKR---TDAYHSFLVLSFVEETRILSVGLS 567
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 47.2 bits (107), Expect = 7e-06
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +1
Query: 274 VWTVRRNKDEEYDSYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDAL 447
+W+++ + ++ YD Y++VSF++ T L +++ + +EE GF T TL C ND L
Sbjct: 601 LWSLKSSFNDPYDMYLVVSFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLL 660
Query: 448 VQYILMV*DIFV 483
+Q ++ F+
Sbjct: 661 IQVPFLITASFI 672
Score = 32.3 bits (70), Expect = 0.22
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 107 SLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQ 259
+L PI+ V DL + QV G SLR +R+G+ + E+A ELQ
Sbjct: 546 NLGPIVDFCVVDLDRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQ 596
>02_05_1214 + 34976814-34979813
Length = 999
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 304 EYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCH 426
E Y+ V V A V ++GETV EV + G TP + H
Sbjct: 258 EQMQYLYVRVVRARGVAAVGETVAEVKLGNYRGVTPATAAH 298
>06_01_0220 - 1673657-1675765
Length = 702
Score = 32.3 bits (70), Expect = 0.22
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 244 CIRAPGSPNAVWTVRRNKDEEYDSYIIVS---FVNATLVLSIGETVEEVTD-SGFLGTTP 411
C+ A G+P+A+ KD+EY S +++ +N +VL E ++ V D S LG P
Sbjct: 187 CLAARGNPDALLICNGYKDDEYVSLALIARTMGLNTVIVLEQEEELDIVVDASRRLGVRP 246
Query: 412 TLSCHA 429
+ A
Sbjct: 247 VVGMRA 252
>11_06_0703 + 26444128-26446215,26446525-26447226
Length = 929
Score = 30.3 bits (65), Expect = 0.90
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 395 NPESVTSSTVSPMERTSVALTNDTMM*ESYSSSLFR-RTVQTAFGDPGALIQPFQQLQDH 219
+PES +T+S M R SV DT++ S ++ RT +T++ + P + +
Sbjct: 506 DPESQNGNTMSKMRRVSVVTEKDTVVLPSMDKKQYKVRTYRTSYSKSLRVYNPLFKRLTY 565
Query: 218 VLVL 207
+ VL
Sbjct: 566 LRVL 569
>05_04_0445 -
21316412-21317162,21317253-21317385,21317634-21317721,
21317873-21318238
Length = 445
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = -3
Query: 461 RIYCTRASLPIA*QLSVGVVPKNPESVTSSTVSPMERTSVALTNDTMM*ESYSSSLFRRT 282
R++C S+P + G+VP PE + R++ + + ++M S S R
Sbjct: 261 RMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTTSFSKSSIMDRSMDFSSSRDF 320
Query: 281 VQTAFGD 261
F D
Sbjct: 321 SSARFSD 327
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 295 KDEEYDSYIIVSFVNATLVLSIGETVEEVTDSG 393
+D EY +Y+I+S N T+ IG + V ++G
Sbjct: 633 EDNEYHAYLIISLENRTMETCIGSFLGMVLETG 665
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -2
Query: 168 TCGVSSPA----KSATWQANIGDKESISSTSTKFLKGLGAKKNVSPSSRGIAELNSGSSS 1
TCG PA KS++ ++ + +S SS K + S ++ G+A SGSSS
Sbjct: 494 TCGSELPAVKEEKSSSSSQSLNNSQSCSSEHAKTIGSSKEDARSSTAASGVAYKTSGSSS 553
>11_06_0706 +
26460400-26462254,26462499-26462562,26462929-26462981,
26464400-26464401,26464528-26464598,26464938-26465020,
26465065-26465126
Length = 729
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 395 NPESVTSSTVSPMERTSVALTNDTMM*ESYSSSLFR-RTVQTAF 267
NPES+ +TVS + R SV + +M S ++ RT +T++
Sbjct: 510 NPESLVGNTVSKLRRVSVVTDKNMVMLPSMDEVQYKVRTWKTSY 553
>11_06_0697 + 26371193-26371397,26371562-26374254
Length = 965
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 395 NPESVTSSTVSPMERTSVALTNDTMM*ESYSSSLFR-RTVQTAF 267
NPES+ +TVS + R SV + +M S ++ RT +T++
Sbjct: 461 NPESLVGNTVSKLRRVSVVTDKNMVMLPSMDEVQYKVRTWKTSY 504
>11_01_0405 +
3079275-3079622,3079816-3079903,3081411-3081543,
3081642-3082395
Length = 440
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 461 RIYCTRASLPIA*QLSVGVVPKNPESVTSSTVSPMERTSVALTNDTMM*ES--YSSSLF 291
R+ C S+P + + G VP P+S+ + +++ SV+ + ++M S +SS+ F
Sbjct: 254 RMCCLMHSIPASSLEAGGTVPSQPDSILAHSLNESSFRSVSFSKSSVMDHSMHFSSAQF 312
>06_01_1009 -
7859357-7859405,7860476-7860660,7860747-7860821,
7860852-7861313,7861411-7861482,7861629-7861775,
7861888-7862043,7862136-7862306,7862505-7862675,
7862763-7862828,7864302-7864387,7864505-7864667
Length = 600
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 194 RSSLRALRHGLEVAEKAVSELQDHRMLFGQFDEIKMRNTILTS 322
++ +RALR EKAV EL D L F+++K+ ++L S
Sbjct: 64 QTEIRALRLSERAREKAVEELTDE--LEKMFEKLKLTESLLDS 104
>04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251
Length = 364
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 243 AFSATSRPCLSALREDRGPFPHA 175
AF A + PCL DR PFP A
Sbjct: 101 AFDALTSPCLKRGGGDRNPFPFA 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,331,266
Number of Sequences: 37544
Number of extensions: 298621
Number of successful extensions: 756
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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