Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00178
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)                   113   8e-26
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      32   0.23 
SB_54215| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)
          Length = 864

 Score =  113 bits (272), Expect = 8e-26
 Identities = 50/66 (75%), Positives = 59/66 (89%)
 Frame = +1

Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
           PG+PNAVWTV+    +E+D+YI+VSF+NATLVLSIGETVEEVTDSGFLGTTPTLSC  +G
Sbjct: 400 PGNPNAVWTVKHTTADEFDAYIVVSFINATLVLSIGETVEEVTDSGFLGTTPTLSCSQLG 459

Query: 436 NDALVQ 453
            +ALVQ
Sbjct: 460 EEALVQ 465



 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 34/54 (62%), Positives = 43/54 (79%)
 Frame = +2

Query: 2   DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTP 163
           DDE EFSS M LEEG TFFF PR L+NLVLVDE++SL+PI+ C V+++A  + P
Sbjct: 347 DDELEFSSTMELEEGTTFFFQPRGLKNLVLVDELESLAPIMNCQVSEMAVSELP 400



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 453 VYPDGIRHIRADKRV 497
           +YPDGIRHIRADKRV
Sbjct: 466 IYPDGIRHIRADKRV 480


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 15/66 (22%), Positives = 36/66 (54%)
 Frame = +1

Query: 298 DEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQYILMV*DI 477
           +E+Y S++I+S  +++++L   + + EV  SGF     T+     GN + +  +  + ++
Sbjct: 180 NEKYHSFLILSREDSSMILKTEQEIMEVDQSGFSTQCATIYAGNFGNGSYILQLPCISEV 239

Query: 478 FVLTNV 495
             L ++
Sbjct: 240 NQLQHI 245


>SB_54215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +2

Query: 89  LVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHR 268
           +++   +L PI+   V DL  +   Q+    G     SLR +R+G+ + E A  +L    
Sbjct: 289 VMETFTNLGPIVDMVVVDLERQGQGQLVTCSGAKKEGSLRIIRNGIGIHEHATIDLAGIM 348

Query: 269 MLFGQFDEIK 298
           +L    +E++
Sbjct: 349 VLSLSGEEVE 358


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = +2

Query: 107 SLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHRMLFGQF 286
           S  P+   H +    ++ P +  A G+G    L  L++  +  ++   +LQ  + L    
Sbjct: 239 STGPLPPIHPSQHRPQEHPHLPAAAGRGATVKLTGLQNRQQQLQQIQEQLQRRKQLQKMQ 298

Query: 287 DEIKMRNTI 313
           +E+K R  +
Sbjct: 299 EELKHRKLL 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,624,636
Number of Sequences: 59808
Number of extensions: 341471
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)