Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00178
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein. 156 3e-38
BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, sub... 156 3e-38
AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SA... 156 3e-38
U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein. 42 0.002
L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1 pr... 42 0.002
BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA bin... 42 0.002
BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA bin... 42 0.002
BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA bin... 42 0.002
AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA bin... 42 0.002
AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum G... 42 0.002
U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding fa... 38 0.019
U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylat... 31 2.2
BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenyl... 31 2.2
AK126967-1|BAC86768.1| 206|Homo sapiens protein ( Homo sapiens ... 30 3.9
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 29 6.8
U83981-1|AAC25631.1| 674|Homo sapiens apoptosis associated prot... 29 9.0
CR457259-1|CAG33540.1| 674|Homo sapiens PPP1R15A protein. 29 9.0
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 29 9.0
BC003067-1|AAH03067.1| 674|Homo sapiens protein phosphatase 1, ... 29 9.0
AK001361-1|BAA91649.1| 674|Homo sapiens protein ( Homo sapiens ... 29 9.0
>D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein.
Length = 1253
Score = 156 bits (379), Expect = 3e-38
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLAC 181
D+EPEFSSAMPLEEGDTFFF PRPL+NLVLVDE+DSLSPIL C +ADLA EDTPQ+Y+AC
Sbjct: 404 DEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVAC 463
Query: 182 GKGPRSSLRALRHGLEVAEKAVSEL 256
G+GPRSSLR LRHGLEV+E AVSEL
Sbjct: 464 GRGPRSSLRVLRHGLEVSEMAVSEL 488
Score = 120 bits (290), Expect = 2e-27
Identities = 55/66 (83%), Positives = 63/66 (95%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG+PNAVWTVRR+ ++E+D+YIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSC +G
Sbjct: 489 PGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLG 548
Query: 436 NDALVQ 453
+DALVQ
Sbjct: 549 DDALVQ 554
Score = 36.3 bits (80), Expect = 0.059
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 453 VYPDGIRHIRADKRV 497
VYPDGIRHIRADKRV
Sbjct: 555 VYPDGIRHIRADKRV 569
>BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b,
subunit 3, 130kDa protein.
Length = 1217
Score = 156 bits (379), Expect = 3e-38
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLAC 181
D+EPEFSSAMPLEEGDTFFF PRPL+NLVLVDE+DSLSPIL C +ADLA EDTPQ+Y+AC
Sbjct: 368 DEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVAC 427
Query: 182 GKGPRSSLRALRHGLEVAEKAVSEL 256
G+GPRSSLR LRHGLEV+E AVSEL
Sbjct: 428 GRGPRSSLRVLRHGLEVSEMAVSEL 452
Score = 120 bits (290), Expect = 2e-27
Identities = 55/66 (83%), Positives = 63/66 (95%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG+PNAVWTVRR+ ++E+D+YIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSC +G
Sbjct: 453 PGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLG 512
Query: 436 NDALVQ 453
+DALVQ
Sbjct: 513 DDALVQ 518
Score = 36.3 bits (80), Expect = 0.059
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 453 VYPDGIRHIRADKRV 497
VYPDGIRHIRADKRV
Sbjct: 519 VYPDGIRHIRADKRV 533
>AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SAP
130 protein.
Length = 1217
Score = 156 bits (379), Expect = 3e-38
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +2
Query: 2 DDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLAC 181
D+EPEFSSAMPLEEGDTFFF PRPL+NLVLVDE+DSLSPIL C +ADLA EDTPQ+Y+AC
Sbjct: 368 DEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVAC 427
Query: 182 GKGPRSSLRALRHGLEVAEKAVSEL 256
G+GPRSSLR LRHGLEV+E AVSEL
Sbjct: 428 GRGPRSSLRVLRHGLEVSEMAVSEL 452
Score = 120 bits (290), Expect = 2e-27
Identities = 55/66 (83%), Positives = 63/66 (95%)
Frame = +1
Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
PG+PNAVWTVRR+ ++E+D+YIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSC +G
Sbjct: 453 PGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLG 512
Query: 436 NDALVQ 453
+DALVQ
Sbjct: 513 DDALVQ 518
Score = 36.3 bits (80), Expect = 0.059
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 453 VYPDGIRHIRADKRV 497
VYPDGIRHIRADKRV
Sbjct: 519 VYPDGIRHIRADKRV 533
>U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein.
Length = 1140
Score = 41.5 bits (93), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 IRAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
I PG +W +R + + E D +++SFV T VL + GE VEE GF+ T C
Sbjct: 402 IDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFC 460
Query: 424 HAMGNDALVQ 453
+ + L+Q
Sbjct: 461 GNVAHQQLIQ 470
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
+V ++ +L PI+ V DL + Q+ G SLR +R+G+ + E A +L
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDL 404
>L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1
protein.
Length = 1140
Score = 41.5 bits (93), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 IRAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
I PG +W +R + + E D +++SFV T VL + GE VEE GF+ T C
Sbjct: 402 IDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFC 460
Query: 424 HAMGNDALVQ 453
+ + L+Q
Sbjct: 461 GNVAHQQLIQ 470
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
+V ++ +L PI+ V DL + Q+ G SLR +R+G+ + E A +L
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDL 404
>BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 41.5 bits (93), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 IRAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
I PG +W +R + + E D +++SFV T VL + GE VEE GF+ T C
Sbjct: 402 IDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFC 460
Query: 424 HAMGNDALVQ 453
+ + L+Q
Sbjct: 461 GNVAHQQLIQ 470
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
+V ++ +L PI+ V DL + Q+ G SLR +R+G+ + E A +L
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDL 404
>BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 41.5 bits (93), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 IRAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
I PG +W +R + + E D +++SFV T VL + GE VEE GF+ T C
Sbjct: 402 IDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFC 460
Query: 424 HAMGNDALVQ 453
+ + L+Q
Sbjct: 461 GNVAHQQLIQ 470
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
+V ++ +L PI+ V DL + Q+ G SLR +R+G+ + E A +L
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDL 404
>BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 41.5 bits (93), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 IRAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
I PG +W +R + + E D +++SFV T VL + GE VEE GF+ T C
Sbjct: 402 IDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFC 460
Query: 424 HAMGNDALVQ 453
+ + L+Q
Sbjct: 461 GNVAHQQLIQ 470
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
+V ++ +L PI+ V DL + Q+ G SLR +R+G+ + E A +L
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDL 404
>AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 41.5 bits (93), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 IRAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
I PG +W +R + + E D +++SFV T VL + GE VEE GF+ T C
Sbjct: 402 IDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFC 460
Query: 424 HAMGNDALVQ 453
+ + L+Q
Sbjct: 461 GNVAHQQLIQ 470
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
+V ++ +L PI+ V DL + Q+ G SLR +R+G+ + E A +L
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDL 404
>AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum
Group E Complementing protein protein.
Length = 1140
Score = 41.5 bits (93), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 IRAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
I PG +W +R + + E D +++SFV T VL + GE VEE GF+ T C
Sbjct: 402 IDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFC 460
Query: 424 HAMGNDALVQ 453
+ + L+Q
Sbjct: 461 GNVAHQQLIQ 470
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
+V ++ +L PI+ V DL + Q+ G SLR +R+G+ + E A +L
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDL 404
>U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding
factor protein.
Length = 1140
Score = 37.9 bits (84), Expect = 0.019
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 247 IRAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSC 423
I PG +W +R + + E +++SFV T VL + GE VEE GF+ T C
Sbjct: 402 IDLPGI-KGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFC 460
Query: 424 HAMGNDALVQ 453
+ + L+Q
Sbjct: 461 GNVAHQQLIQ 470
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 83 LVLVDEMDSLSPILACHVADLAGEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSEL 256
+V ++ +L PI+ V DL + Q+ G SLR +R+G+ + E A +L
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDL 404
>U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylation
specificity factor protein.
Length = 1442
Score = 31.1 bits (67), Expect = 2.2
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +1
Query: 280 TVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQYI 459
T + D ++I+S ++T++L G+ + E+ SGF PT+ +G++ +YI
Sbjct: 562 TPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDN---RYI 618
Query: 460 LMV 468
+ V
Sbjct: 619 VQV 621
>BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and
polyadenylation specific factor 1, 160kDa protein.
Length = 1443
Score = 31.1 bits (67), Expect = 2.2
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +1
Query: 280 TVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDALVQYI 459
T + D ++I+S ++T++L G+ + E+ SGF PT+ +G++ +YI
Sbjct: 562 TPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDN---RYI 618
Query: 460 LMV 468
+ V
Sbjct: 619 VQV 621
>AK126967-1|BAC86768.1| 206|Homo sapiens protein ( Homo sapiens
cDNA FLJ45020 fis, clone BRAWH3016123. ).
Length = 206
Score = 30.3 bits (65), Expect = 3.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 133 CGRFSWGRYSASLLGMWERPTILP*STK 216
CG ++WG + S + W++PT P +T+
Sbjct: 17 CGLWAWGSLALSSMRTWQQPTFPPVTTR 44
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 29.5 bits (63), Expect = 6.8
Identities = 36/141 (25%), Positives = 64/141 (45%)
Frame = -2
Query: 423 TTKCRCSSQKS*VSDFFNSLTDGKNKCGINE*HNDVRIVFLIFISSNCPNSIR*SWSSDT 244
+TKCRC S+ + N+L G ++ + + I+ +SS+ P+S S SS +
Sbjct: 15 STKCRCGSRIAGP----NALGSGGSRSSSSSSRS---ILSSSILSSSIPSS---SSSSSS 64
Query: 243 AFSATSRPCLSALREDRGPFPHAK*TCGVSSPAKSATWQANIGDKESISSTSTKFLKGLG 64
S+ S S+ P + + SS + S++ + + S SS+S+
Sbjct: 65 PSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSP--SSSS 122
Query: 63 AKKNVSPSSRGIAELNSGSSS 1
+ + SPSS + +S SSS
Sbjct: 123 SSSSSSPSSSSSSPSSSSSSS 143
>U83981-1|AAC25631.1| 674|Homo sapiens apoptosis associated protein
protein.
Length = 674
Score = 29.1 bits (62), Expect = 9.0
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 180 HAK*TCGVSSPAKSATWQANIGDKESISSTSTKFLKGLGAKK-NVSPSSRG 31
H T +S +K +TW + G++E+ ++ + + GA+K +VSP S G
Sbjct: 204 HRTSTSALSPGSKPSTWVSCPGEEENQATEDKRTERSKGARKTSVSPRSSG 254
>CR457259-1|CAG33540.1| 674|Homo sapiens PPP1R15A protein.
Length = 674
Score = 29.1 bits (62), Expect = 9.0
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 180 HAK*TCGVSSPAKSATWQANIGDKESISSTSTKFLKGLGAKK-NVSPSSRG 31
H T +S +K +TW + G++E+ ++ + + GA+K +VSP S G
Sbjct: 204 HRTSTSALSPGSKPSTWVSCPGEEENQATEDKRTERSKGARKTSVSPRSSG 254
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 29.1 bits (62), Expect = 9.0
Identities = 37/141 (26%), Positives = 64/141 (45%)
Frame = -2
Query: 423 TTKCRCSSQKS*VSDFFNSLTDGKNKCGINE*HNDVRIVFLIFISSNCPNSIR*SWSSDT 244
+TKCRC S+ + N+L G ++ + + I+ +SS+ P+S S SS +
Sbjct: 15 STKCRCGSRIAGP----NALGSGGSRSSSSSSRS---ILSSSILSSSIPSS---SSSSSS 64
Query: 243 AFSATSRPCLSALREDRGPFPHAK*TCGVSSPAKSATWQANIGDKESISSTSTKFLKGLG 64
S+ S S+ P + T SS + S++ + + S SS+S+
Sbjct: 65 PSSSHSSSSPSSSHSSSSPSSSSS-TSSPSSSSSSSSSSPSSSNSSSSSSSSSP--SSSS 121
Query: 63 AKKNVSPSSRGIAELNSGSSS 1
+ + SPSS + +S SSS
Sbjct: 122 SSSSSSPSSSSSSPSSSSSSS 142
Score = 29.1 bits (62), Expect = 9.0
Identities = 28/97 (28%), Positives = 44/97 (45%)
Frame = -2
Query: 291 SSNCPNSIR*SWSSDTAFSATSRPCLSALREDRGPFPHAK*TCGVSSPAKSATWQANIGD 112
SS+ P+S S SS ++ S+TS P S+ P + SS S++ ++
Sbjct: 70 SSSSPSSSH-SSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSP 128
Query: 111 KESISSTSTKFLKGLGAKKNVSPSSRGIAELNSGSSS 1
S SS S+ + + SPSS + +S SSS
Sbjct: 129 SSSSSSPSSS-----SSSSSSSPSSSSSSPSSSSSSS 160
>BC003067-1|AAH03067.1| 674|Homo sapiens protein phosphatase 1,
regulatory (inhibitor) subunit 15A protein.
Length = 674
Score = 29.1 bits (62), Expect = 9.0
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 180 HAK*TCGVSSPAKSATWQANIGDKESISSTSTKFLKGLGAKK-NVSPSSRG 31
H T +S +K +TW + G++E+ ++ + + GA+K +VSP S G
Sbjct: 204 HRTSTSALSPGSKPSTWVSCPGEEENQATEDKRTERSKGARKTSVSPRSSG 254
>AK001361-1|BAA91649.1| 674|Homo sapiens protein ( Homo sapiens
cDNA FLJ10499 fis, clone NT2RP2000346, weakly similar to
MYELOID DIFFERENTIATION PRIMARY RESPONSE PROTEIN MYD116.
).
Length = 674
Score = 29.1 bits (62), Expect = 9.0
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 180 HAK*TCGVSSPAKSATWQANIGDKESISSTSTKFLKGLGAKK-NVSPSSRG 31
H T +S +K +TW + G++E+ ++ + + GA+K +VSP S G
Sbjct: 204 HRTSTSALSPGSKPSTWVSCPGEEENQATEDKRTERSKGARKTSVSPRSSG 254
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,533,582
Number of Sequences: 237096
Number of extensions: 1761401
Number of successful extensions: 3566
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3558
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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