Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00178
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   106   8e-24
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    41   4e-04
Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical p...    30   0.81 
U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   5.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   5.7  
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    27   5.7  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U21308-1|AAB93314.3|  300|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  106 bits (255), Expect = 8e-24
 Identities = 45/66 (68%), Positives = 59/66 (89%)
 Frame = +1

Query: 256 PGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMG 435
           PG+PNAVWTV++N +++YDSYI+VSFVNATL L+IG+TVEE +DSGFL TTPT+ C  +G
Sbjct: 453 PGNPNAVWTVKKNIEDQYDSYIVVSFVNATLALTIGDTVEEASDSGFLPTTPTIGCAMIG 512

Query: 436 NDALVQ 453
           +D+LVQ
Sbjct: 513 DDSLVQ 518



 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +2

Query: 5   DEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPILACHVADLAGEDTPQVYLACG 184
           D+ EFSSAM   E D  FF P  L++L+ +D MDSLSP+    + D+A ED  Q+Y   G
Sbjct: 369 DDDEFSSAMGFGENDAAFFEPHELKSLIPIDSMDSLSPLTDAVIGDIAREDAAQIYSLVG 428

Query: 185 KGPRSSLRALRHGLEVAEKAVSEL 256
           +G RSSL+ LR+GLE++E AVS+L
Sbjct: 429 RGARSSLKVLRNGLEISEMAVSDL 452



 Score = 30.7 bits (66), Expect = 0.61
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 453 VYPDGIRHIRADKRV 497
           +Y +GIRHIRADKR+
Sbjct: 519 IYSEGIRHIRADKRI 533


>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
           protein Y76B12C.7 protein.
          Length = 1454

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +1

Query: 274 VWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHAMGNDAL 447
           +W V R ++E +  Y+IVS V +TL+L +GE + E+ +  F+   PT++   +   AL
Sbjct: 514 LWAVGRKENESH-KYLIVSRVRSTLILELGEELVELEEQLFVTGEPTVAAGELSQGAL 570


>Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical
           protein F54C9.8 protein.
          Length = 553

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 215 RHGLEVAEKAVSELQDHRMLFGQFDEIKMRNTILTSLCHS 334
           R G++  E+   E  D+ M F  FD++  +  + TSLC S
Sbjct: 160 RTGVKFLERHFPEDHDNEMHFVLFDKLTEQGAVFTSLCRS 199


>U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical
           protein F41C6.7 protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +1

Query: 250 RAPGSPNAVWTVRRNKDEEYDSYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCHA 429
           RAP + N +    + +  EY   IIV+  N  LVL I      ++ S  +GT+   +  +
Sbjct: 77  RAPSTLNILKMTNKKEFAEYAIMIIVNLANVALVL-IKSVAAYLSSSFSIGTS---AIES 132

Query: 430 MGNDALVQYILMV 468
            G D  V ++L+V
Sbjct: 133 FG-DVFVSFLLLV 144


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +2

Query: 203  LRALRHGLEVAEKAVSELQDHRMLFGQFDEIKMRNTILTSLCHSLMPHLFFPSVRLLKKS 382
            LRAL++ L  A     +  D +M     +++  +  ++ S+C +L+P L    + LL   
Sbjct: 2040 LRALKYVLVSAGNIKRDKLD-KMGSAALEDVAEQQMLIQSVCETLVPKLVNEDIALLFSL 2098

Query: 383  LTQDFWELH 409
            L+  F  +H
Sbjct: 2099 LSDVFPGIH 2107


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +2

Query: 203  LRALRHGLEVAEKAVSELQDHRMLFGQFDEIKMRNTILTSLCHSLMPHLFFPSVRLLKKS 382
            LRAL++ L  A     +  D +M     +++  +  ++ S+C +L+P L    + LL   
Sbjct: 2040 LRALKYVLVSAGNIKRDKLD-KMGSAALEDVAEQQMLIQSVCETLVPKLVNEDIALLFSL 2098

Query: 383  LTQDFWELH 409
            L+  F  +H
Sbjct: 2099 LSDVFPGIH 2107


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/88 (23%), Positives = 40/88 (45%)
 Frame = +2

Query: 158 TPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHRMLFGQFDEIKMRNTILTSLCHSL 337
           TP+  + C +        +   +   +    E+  H M F Q  +I M   +LT    + 
Sbjct: 139 TPKKRIVCNRNSVDFDENIHEEVTTRDALHYEITAHDMAFLQ--KINMERKLLTG--DTY 194

Query: 338 MPHLFFPSVRLLKKSLTQDFWELHLHLV 421
           +P   F  +R++K+  T+ F ++H HL+
Sbjct: 195 LPMATF--IRIIKELETEAFKQIHNHLL 220


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/88 (23%), Positives = 40/88 (45%)
 Frame = +2

Query: 158 TPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHRMLFGQFDEIKMRNTILTSLCHSL 337
           TP+  + C +        +   +   +    E+  H M F Q  +I M   +LT    + 
Sbjct: 180 TPKKRIVCNRNSVDFDENIHEEVTTRDALHYEITAHDMAFLQ--KINMERKLLTG--DTY 235

Query: 338 MPHLFFPSVRLLKKSLTQDFWELHLHLV 421
           +P   F  +R++K+  T+ F ++H HL+
Sbjct: 236 LPMATF--IRIIKELETEAFKQIHNHLL 261


>Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical
           protein K09A11.1 protein.
          Length = 605

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 396 KS*VSDFFNSLTDGKNKCGI 337
           KS V D+F  L DG+NKC +
Sbjct: 3   KSRVWDYFLKLQDGRNKCNL 22


>Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical
           protein C40C9.2 protein.
          Length = 534

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +1

Query: 247 IRAPGSPNAVW----TVRRNKDEEYDSYIIVSFV 336
           IR PG+ NA+W     +  + DE +DS   V++V
Sbjct: 102 IRIPGNANAIWKPDVLLYNSADENFDSTYPVNYV 135


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
           protein M18.5 protein.
          Length = 1134

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 298 DEEYDSYIIVSFVNATLVLSI-GETVEEV 381
           D   D+Y+IVS  + T VL I GE +E+V
Sbjct: 410 DSNADNYVIVSLSDETHVLQITGEELEDV 438


>U21308-1|AAB93314.3|  300|Caenorhabditis elegans Hypothetical
           protein ZK1290.7 protein.
          Length = 300

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 438 ITHCMTTKCRCSSQKS*VSDFFNSLTDGKNKCGINE*HNDVRIVFLI-FISSNC 280
           IT C       + QK+ +  FF SL   K    I E  ND  ++FLI F ++ C
Sbjct: 237 ITLCQININIDNDQKTNMKQFFKSLISDKRYVIIFEVVNDYGVLFLINFDNTTC 290


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
            C18H2.1 protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 387  VSDFFNSLTDGKNKCGINE*HNDVRIV 307
            +  FF+ +TD K+K  IN   +D+ IV
Sbjct: 1332 IQQFFSDMTDSKSKSKINVCSSDIGIV 1358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,294,016
Number of Sequences: 27780
Number of extensions: 258582
Number of successful extensions: 653
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)