Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00178
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.33 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.33 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.33 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.33 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 149 GEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHRMLFGQF 286
           G + P+V L+ G    + L  L HG   A    S+  D   LFG +
Sbjct: 629 GLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRPDLLHLFGSW 674


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 149 GEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHRMLFGQF 286
           G + P+V L+ G    + L  L HG   A    S+  D   LFG +
Sbjct: 629 GLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRPDLLHLFGSW 674


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 149 GEDTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHRMLFGQF 286
           G + P+V L+ G    + L  L HG   A    S+  D   LFG +
Sbjct: 629 GLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRPDLLHLFGSW 674


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 155 DTPQVYLACGKGPRSSLRALRHGLEVAEKAVSELQDHRMLFG 280
           +TPQ+ +  G GP+  LR+L   + V    V E   +   FG
Sbjct: 325 NTPQLLMLSGIGPKEHLRSLGIPVVVDLPGVGENLHNHQSFG 366


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 182  GKGPRSSLRALRHGLEVAE 238
            G+  RSSLR L   + VAE
Sbjct: 1842 GRSSRSSLRTLLPPISVAE 1860


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 182  GKGPRSSLRALRHGLEVAE 238
            G+  RSSLR L   + VAE
Sbjct: 1838 GRSSRSSLRTLLPPISVAE 1856


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,271
Number of Sequences: 438
Number of extensions: 3216
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)