Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00177
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    22   6.5  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 508 YSMVHISEETILTALQSSQLRTYDIDYTLPITIEIGAMDRPHQ 636
           Y  ++ S  T  TA+ S+ +   ++  T+P     G+M  P+Q
Sbjct: 245 YPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQ 287


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 508 YSMVHISEETILTALQSSQLRTYDIDYTLPITIEIGAMDRPHQ 636
           Y  ++ S  T  TA+ S+ +   ++  T+P     G+M  P+Q
Sbjct: 193 YPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQ 235


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 508 YSMVHISEETILTALQSSQLRTYDIDYTLPITIEIGAMDRPHQ 636
           Y  ++ S  T  TA+ S+ +   ++  T+P     G+M  P+Q
Sbjct: 376 YPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQ 418


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 140 MVCFTCKS 117
           +VCFTCKS
Sbjct: 959 LVCFTCKS 966


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 140 MVCFTCKS 117
           +VCFTCKS
Sbjct: 959 LVCFTCKS 966


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 140 MVCFTCKS 117
           +VCFTCKS
Sbjct: 959 LVCFTCKS 966


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 140 MVCFTCKS 117
           +VCFTCKS
Sbjct: 959 LVCFTCKS 966


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 538 ILTALQSSQLRTYDIDYTLPITIEIG 615
           I+T + + +++    DYTLP+   +G
Sbjct: 64  IITRVINEEVKLASGDYTLPVGTTVG 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,164
Number of Sequences: 336
Number of extensions: 4555
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)