Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00177
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    52   7e-08
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   2.3  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   7.2  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   7.2  

>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 28/77 (36%), Positives = 39/77 (50%)
 Frame = +3

Query: 3   ENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFEL 182
           E KG A+GN+  + C HNS A    R     +  V       E YHF++   IN   +EL
Sbjct: 118 ELKGEALGNSEHIRCCHNSFA----RSDPFISEEVRAATDEDEVYHFIAYTNINNVFYEL 173

Query: 183 DGLKPYPMDHGPWAADE 233
           DGL+  P++HG    +E
Sbjct: 174 DGLQAAPINHGSCTKEE 190


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +1

Query: 514 MVHISEETILTALQSSQLRTYD----IDYTLPITIEIGAMDRPHQDSSILLVDPVEQGAV 681
           ++H+ E TI  A    +L T D    +D +  IT E  A+D+ HQ+ ++     V++G  
Sbjct: 287 ILHLDEGTICPA--DGRLITKDCFLQVDQSA-ITGESLAVDK-HQNDTMYSSSTVKRGEA 342

Query: 682 VKFVTANKDSQIIG 723
              VTA  DS  +G
Sbjct: 343 FMVVTATADSTFVG 356


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 294 CSPASLPSLSAITL*IYLSNPHQLPTDH 211
           CS  SLP+  A+T  + LSNP +  T+H
Sbjct: 168 CSFLSLPNKIAVTANLKLSNPTKAYTNH 195


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 595 PITIEIGAMDRPHQDSSILLVDPVEQ 672
           P TI +GA   P  D+++ +VDP  Q
Sbjct: 582 PNTIRVGAFWYPFVDATLAIVDPETQ 607


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 161 DWYQANKMVCFTCKSASRNSSIFVCLFACLW 69
           D++ A++MV  T   A  N S+F CL+  LW
Sbjct: 426 DFFFADQMVSLTY--ACGNISLFFCLYKRLW 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,343
Number of Sequences: 5004
Number of extensions: 71235
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)