Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00177
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 55 8e-08
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 48 1e-05
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 40 0.002
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 37 0.016
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 31 0.81
12_02_1118 + 26210322-26212559 30 2.5
11_04_0435 + 17710853-17711003,17711312-17711547,17712417-17712752 29 4.3
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249... 29 5.7
05_06_0022 + 24988363-24988453,24989102-24989325,24989433-249894... 28 9.9
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 28 9.9
01_06_1586 - 38465662-38466267,38467986-38468079,38468169-38468455 28 9.9
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 54.8 bits (126), Expect = 8e-08
Identities = 32/82 (39%), Positives = 43/82 (52%)
Frame = +3
Query: 9 KGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFELDG 188
KG AI N+ + AHNS A P+ ++ A G+ E YHF+S +P G L+ELDG
Sbjct: 118 KGLAINNSDSIRTAHNSFARPEPFVSDEQRAA---GK-DDEVYHFISYLPFEGVLYELDG 173
Query: 189 LKPYPMDHGPWAADEDWTDKFR 254
LK P+ G + D D R
Sbjct: 174 LKEGPISLGQCSGGPDDLDWLR 195
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +2
Query: 302 DIRFNLMAVVPDRRLALTQKLGALEINQKRVKEAISK 412
+IRFNLMA++ +R+ T +L LE + ++ + +++
Sbjct: 212 EIRFNLMAIIKNRKDVYTAELKELEKRRDQLLQEMNE 248
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +3
Query: 9 KGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFELDG 188
KG AI N+ + A NS A P+ + ++ + V + YHF+S VP++G L+ELDG
Sbjct: 171 KGLAIVNSESIRLASNSFARPEVPE--EQKSSVKDD----DVYHFISYVPVDGVLYELDG 224
Query: 189 LKPYPMDHG 215
LK P+ G
Sbjct: 225 LKEGPISLG 233
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 138 HFVSLVPINGHLFELDGLKPYPMDHGP 218
H++ V +G L+ELDG+KP P++HGP
Sbjct: 288 HYICFVECDGTLYELDGMKPGPINHGP 314
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 54 NSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFELDGLKPYPMDHGPWAAD 230
++H++ + TD N V+ HFV ++G L+ELDG K P+ HGP + D
Sbjct: 259 DAHSVAASAGDTDANVEVNE--------HFVCFSCVDGELYELDGRKSQPICHGPSSPD 309
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 31.5 bits (68), Expect = 0.81
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 126 GEAYHFVSLVPINGHLFELDGLKPYPMDHGPWAAD 230
G H+V ++ +FELDG P+ HGP + D
Sbjct: 158 GVIEHYVCFSCVDDEIFELDGGNSQPISHGPSSPD 192
>12_02_1118 + 26210322-26212559
Length = 745
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3
Query: 12 GWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSL 152
G A G LAC H + IP + + G GR A H V L
Sbjct: 386 GEADGELRVLACFHTNRNIPTLLNLVESSRGTGRGRLVMYAMHLVEL 432
>11_04_0435 + 17710853-17711003,17711312-17711547,17712417-17712752
Length = 240
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = -2
Query: 299 ELVLLHLYQ--VSLPLPSKFICPI 234
ELV +LY+ V++PLPS+FIC +
Sbjct: 15 ELVFHYLYRRAVNMPLPSEFICDV 38
>03_06_0617 -
35124114-35124148,35124243-35124335,35124415-35124919,
35125039-35125238,35125514-35125604,35125699-35126769
Length = 664
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 520 HISEETILTALQSSQLRTYDIDYTLPITIEIGAMDRPHQDSSILLVDPVEQGAVVKF 690
+I EE I T S D+D T+ + M PH D S L+++ + G VKF
Sbjct: 342 YIDEEAITT---SGTGPPQDLDDTVDLDSH-AEMVNPHPDGSPLIIEELSAGTTVKF 394
>05_06_0022 +
24988363-24988453,24989102-24989325,24989433-24989494,
24990219-24990440,24990740-24990869,24991373-24991698,
24991910-24992051,24992169-24992414
Length = 480
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 643 SILLVDPVEQGAVVKFVTANKDSQIIGDIYPTSTTA 750
S LLVDP E G + + N ++ + +IYP + A
Sbjct: 408 SNLLVDPEEIGCLERVSHLNDEADCVHEIYPDGSAA 443
>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 302 DIRFNLMAVVPDRRLALTQKLGALEINQKRVKEAISK 412
D+R + +R + +K+G LE+ ++V+EA+ K
Sbjct: 1413 DLRSRHQRKIMERARKMAEKIGRLEVEMQKVQEALLK 1449
>01_06_1586 - 38465662-38466267,38467986-38468079,38468169-38468455
Length = 328
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 228 DEDWTDKFRG*WQRDLVEMQENKFMILDS 314
D W D FRG + +++NK ++LDS
Sbjct: 216 DGSWKDGFRGAFTAHTPSLKDNKVLLLDS 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,394,534
Number of Sequences: 37544
Number of extensions: 439732
Number of successful extensions: 1063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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