Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00177
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)              116   2e-26
SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)                    37   0.017
SB_46136| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.017
SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)                  32   0.62 
SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.8  
SB_17091| Best HMM Match : DUF931 (HMM E-Value=8.3)                    29   5.8  

>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score =  116 bits (280), Expect = 2e-26
 Identities = 51/84 (60%), Positives = 61/84 (72%)
 Frame = +3

Query: 3   ENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFEL 182
           ENKG+ IGN PELA +HN  A P+ +   +K   +S+ R   EA+HFVS VPI G LFEL
Sbjct: 108 ENKGYVIGNLPELAMSHNKFARPEPKLLPEKTNSISSARAL-EAFHFVSYVPIKGRLFEL 166

Query: 183 DGLKPYPMDHGPWAADEDWTDKFR 254
           DGLKPYP+DHGPW   EDWT+KFR
Sbjct: 167 DGLKPYPIDHGPWGEQEDWTEKFR 190


>SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)
          Length = 1082

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 173  QMSIDWYQANKMVCFTCKSASR-NSSIFVCLFACLW 69
            Q S+ W  A K VC  C+S  R N S+F+C F+  W
Sbjct: 1002 QCSVQWLFAVKRVCRICQSTGRQNLSVFICQFSVRW 1037


>SB_46136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 17/60 (28%), Positives = 38/60 (63%)
 Frame = +2

Query: 302 DIRFNLMAVVPDRRLALTQKLGALEINQKRVKEAISKIGKHLRHLLGKGREYNGQSELIT 481
           +IRFNLMA+V DR++   Q++ AL + ++++ E I ++ +  +   G+  E +  ++ ++
Sbjct: 27  EIRFNLMAIVTDRKMLYLQEIEALNMKKQQLLERIHELRESSKPEGGEAMETDQANQSVS 86


>SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)
          Length = 184

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 167 SIDWYQANKMVCFTCKSASR-NSSIFVCLFACLW 69
           S+ W  A K VC  C+S  R N S+ +C F+  W
Sbjct: 2   SVRWLYAFKRVCRICQSKGRQNLSVAICQFSVRW 35



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 173 QMSIDWYQANKMVCFTCKSASR-NSSIFVCLFACLW 69
           Q S+ W  A K VC  C+S  R N S+ +C  +  W
Sbjct: 87  QSSVRWLYAFKRVCRICQSTGRQNLSVTICECSVRW 122


>SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 157 QSMDICLN*MVLNHILWIMV--RGQLMRIGQIN 249
           Q +  C+    L H++W+ V  RG +MR GQ++
Sbjct: 170 QELHTCVLLTSLTHVIWLAVRDRGAMMRYGQVS 202


>SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
 Frame = +2

Query: 302 DIRFNLMAVV-PDRRLALT----QKLGALE---INQKRVKEAISKIGKHLRHLLGKGREY 457
           D R+ L  VV P R +  T    + LGA +   ++QKR      + G+H    LG+GREY
Sbjct: 115 DRRYGLFTVVGPRRAIGATHGGGRALGAQDWWVVSQKRGPNRSRRPGRHRCGYLGEGREY 174


>SB_17091| Best HMM Match : DUF931 (HMM E-Value=8.3)
          Length = 193

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/39 (25%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -3

Query: 598 LVVCNLCHMCVVVMIAMLLI-LSLH*CGPCYIKRCINII 485
           L+V  + ++ VVV++ ++++ + +  CGPCY  + + ++
Sbjct: 133 LIVVVVVNVLVVVVVGVVVVFVDIDVCGPCYAMQMLKVV 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,077,881
Number of Sequences: 59808
Number of extensions: 510256
Number of successful extensions: 1333
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)