Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00177
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 50 3e-06
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 36 0.034
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 33 0.31
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 31 1.3
Z92813-4|CAB07288.1| 469|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 8.9
U50070-2|AAR85908.1| 592|Caenorhabditis elegans Forkhead transc... 28 8.9
U50070-1|AAR85907.1| 778|Caenorhabditis elegans Forkhead transc... 28 8.9
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 8.9
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/96 (28%), Positives = 49/96 (51%)
Frame = +3
Query: 9 KGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFELDG 188
+G + N+ E+ HNS + Q + D G S + YHFV+ VPI ++ELDG
Sbjct: 121 RGHCLSNSEEIRTVHNSFS-RQTLFELDIKGGESE-----DNYHFVTYVPIGNKVYELDG 174
Query: 189 LKPYPMDHGPWAADEDWTDKFRG*WQRDLVEMQENK 296
L+ P++ + ++DW + + Q+ + + E +
Sbjct: 175 LRELPLEVAEFQKEQDWIEAIKPVIQQRMQKYSEGE 210
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 35.9 bits (79), Expect = 0.034
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 132 AYHFVSLVPINGHLFELDGLKPYPMDHG 215
AYHF++ V NG LFE+D P+P G
Sbjct: 164 AYHFITYVNKNGQLFEIDSCSPFPRPLG 191
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 135 YHFVSLVPINGHLFELDGLKPYPMDHG 215
YHF++ V NG L+E+D P+P G
Sbjct: 166 YHFITYVNKNGQLYEIDSCAPFPRPLG 192
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 135 YHFVSLVPINGHLFELDGLKPYPMDHGP 218
+HF+ V NG L+E+D +P+ + GP
Sbjct: 155 HHFICFVGKNGILYEIDSRRPFAREIGP 182
>Z92813-4|CAB07288.1| 469|Caenorhabditis elegans Hypothetical
protein T28A8.4 protein.
Length = 469
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 311 FNLMAVVPDRRLALTQKLGALEINQ-KRVKEAISKIGK 421
F L A VPD LAL + G +++++ KR+ + +S G+
Sbjct: 73 FALSATVPDSFLALIRFTGTVQLDERKRINKYVSNDGR 110
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 299 ELVLLHLYQVSLPLPSKFICPILISCPRTMIHRIWFKT 186
++VLL + V L PSKF+C + I R M+ I KT
Sbjct: 419 KMVLLDIDGVRLLYPSKFLC-VTIDEDRQMLESIGLKT 455
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 299 ELVLLHLYQVSLPLPSKFICPILISCPRTMIHRIWFKT 186
++VLL + V L PSKF+C + I R M+ I KT
Sbjct: 419 KMVLLDIDGVRLLYPSKFLC-VTIDEDRQMLESIGLKT 455
>U50070-2|AAR85908.1| 592|Caenorhabditis elegans Forkhead
transcription factor familyprotein 7, isoform b protein.
Length = 592
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 695 QPIKIVKSLVISIQHQQPPSEK 760
QP V +L+ +QH+ PPS+K
Sbjct: 153 QPCDSVMALITHLQHEHPPSDK 174
>U50070-1|AAR85907.1| 778|Caenorhabditis elegans Forkhead
transcription factor familyprotein 7, isoform a protein.
Length = 778
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 695 QPIKIVKSLVISIQHQQPPSEK 760
QP V +L+ +QH+ PPS+K
Sbjct: 339 QPCDSVMALITHLQHEHPPSDK 360
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 299 ELVLLHLYQVSLPLPSKFICPILISCPRTMIHRIWFKT 186
++VLL + V L PSKF+C + I R M+ I KT
Sbjct: 419 KMVLLDIDGVRLLYPSKFLC-VTIDEDRQMLESIGLKT 455
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,711,831
Number of Sequences: 27780
Number of extensions: 403822
Number of successful extensions: 917
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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