Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00177
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase f...    59   3e-09
At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase f...    50   2e-06
At4g17510.1 68417.m02620 ubiquitin carboxyl-terminal hydrolase, ...    34   0.096
At3g58010.1 68416.m06465 expressed protein                             29   4.7  
At3g43670.1 68416.m04655 copper amine oxidase, putative similar ...    29   4.7  
At5g35400.1 68418.m04207 tRNA pseudouridine synthase family prot...    28   6.3  
At4g36970.1 68417.m05239 remorin family protein contains Pfam do...    28   8.3  
At2g10050.1 68415.m01043 zinc knuckle (CCHC-type) family protein...    28   8.3  
At1g05960.1 68414.m00625 expressed protein similar to hypothetic...    28   8.3  

>At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 330

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/75 (38%), Positives = 42/75 (56%)
 Frame = +3

Query: 9   KGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFELDG 188
           KG AI N+  +  AHNS A P+     ++ A         + YHF+S +P++G L+ELDG
Sbjct: 118 KGLAINNSDSIRAAHNSFARPEPFVPEEQKAATKDD----DVYHFISYIPVDGVLYELDG 173

Query: 189 LKPYPMDHGPWAADE 233
           LK  P+  GP   D+
Sbjct: 174 LKEGPISLGPCPGDQ 188


>At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 334

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +3

Query: 3   ENKGWAIGNTPELACAHNSHAIPQARK--KTDKNAGVSTGRFTGEAYHFVSLVPINGHLF 176
           E KG AI N   +  AHN+ A P      + ++ A         + YH++S +P++G L+
Sbjct: 116 ELKGLAINNNEAIRAAHNTFARPDPSSIMEDEELAAAKNLDEDDDVYHYISYLPVDGILY 175

Query: 177 ELDGLKPYPMDHG 215
           ELDGLK  P+  G
Sbjct: 176 ELDGLKEGPISLG 188


>At4g17510.1 68417.m02620 ubiquitin carboxyl-terminal hydrolase,
           putative / ubiquitin thiolesterase, putative similar to
           SP|Q9JKB1 Ubiquitin carboxyl-terminal hydrolase isozyme
           L3 (EC 3.4.19.12) (UCH- L3) (Ubiquitin thiolesterase L3)
           {Mus musculus}; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 234

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 138 HFVSLVPINGHLFELDGLKPYPMDHG 215
           HF+ L  + G L+ELDG K  P+ HG
Sbjct: 172 HFICLACVEGELYELDGRKAGPISHG 197


>At3g58010.1 68416.m06465 expressed protein
          Length = 308

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 339 LSGTTAIRLNLIS*TCSPASLPSLSAITL 253
           +SGT+A+RL+  S    P+S P LS ++L
Sbjct: 9   VSGTSAVRLSFSSSVSPPSSSPPLSRVSL 37


>At3g43670.1 68416.m04655 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 687

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 199 YGLRPSSS-----NKCPLIGTKLTKWYASPVNLPVETPAFLSVFLRACG 68
           +GL PSS      N CP     +  ++ASP  +P+  P  + +F R  G
Sbjct: 339 FGLGPSSMPLVPLNDCPRNAYYIDGFFASPEGIPILQPNMICLFERYAG 387


>At5g35400.1 68418.m04207 tRNA pseudouridine synthase family protein
           weak similarity to  SP|P07649 tRNA pseudouridine
           synthase A (EC 4.2.1.70) (Uracil hydrolyase)
           {Escherichia coli}; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 420

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 335 DRRLALTQKLGALEINQKRVKEAISKIGKHLRHLLGKGREY 457
           D  L + +   ALE+ +K    ++SK+ + L+HL GK   Y
Sbjct: 264 DDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVLSY 304


>At4g36970.1 68417.m05239 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 427

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 3   ENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEA 134
           +NKGW+    P  +   +S AI   R+    ++ ++T  ++G A
Sbjct: 24  DNKGWSSERVPHPSSTTSSSAINGGRRHIGSSSALTTPFYSGRA 67


>At2g10050.1 68415.m01043 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 120

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 69  PQARKKTDKNAGVSTGRFTGEAYHF 143
           PQ  +K  K +G +T +FTG  Y F
Sbjct: 34  PQNTQKLKKKSGENTSKFTGTCYKF 58


>At1g05960.1 68414.m00625 expressed protein similar to hypothetical
           protein GB:AAF80120 GI:8810459 from [Arabidopsis
           thaliana ]
          Length = 982

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 141 FVSLVPINGHLFELDGLKP 197
           F+SL  +N H+F L+GL P
Sbjct: 143 FISLQTVNSHMFNLEGLIP 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,493,474
Number of Sequences: 28952
Number of extensions: 366898
Number of successful extensions: 877
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)