Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00176
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   117   1e-27
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   117   1e-27
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.8  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   7.7  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  117 bits (282), Expect = 1e-27
 Identities = 49/74 (66%), Positives = 60/74 (81%)
 Frame = +2

Query: 32  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 211
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 212 TCQVAYSRIEGDHI 253
           TCQ+  SR+ GD++
Sbjct: 61  TCQIVSSRVNGDYV 74



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 33/57 (57%), Positives = 41/57 (71%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESTKFNAEVHRAHIFGLHVAEYMRSLEQDDED 680
           GAMKGA DGGL +PHS  RFPG+D E+ + + E  R +I+G HVAEYM  L  DDE+
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEE 217



 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 30/80 (37%), Positives = 41/80 (51%)
 Frame = +1

Query: 262 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 441
           A+S ELPRYG+K GL N+ AAY+TG                              E +++
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137

Query: 442 GPGAFRCYLDVGLARTTTGA 501
           GP  F+ +LDVGL RT+TG+
Sbjct: 138 GPRPFKVFLDVGLKRTSTGS 157


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  117 bits (282), Expect = 1e-27
 Identities = 49/74 (66%), Positives = 60/74 (81%)
 Frame = +2

Query: 32  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 211
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 212 TCQVAYSRIEGDHI 253
           TCQ+  SR+ GD++
Sbjct: 61  TCQIVSSRVNGDYV 74



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 33/57 (57%), Positives = 41/57 (71%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESTKFNAEVHRAHIFGLHVAEYMRSLEQDDED 680
           GAMKGA DGGL +PHS  RFPG+D E+ + + E  R +I+G HVAEYM  L  DDE+
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEE 217



 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 30/80 (37%), Positives = 41/80 (51%)
 Frame = +1

Query: 262 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 441
           A+S ELPRYG+K GL N+ AAY+TG                              E +++
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137

Query: 442 GPGAFRCYLDVGLARTTTGA 501
           GP  F+ +LDVGL RT+TG+
Sbjct: 138 GPRPFKVFLDVGLKRTSTGS 157


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 361 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 269
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -3

Query: 319 QHNLSDQP-SHHNVATHV-NKQRTNMVTFNPR 230
           QH LSDQP S +N  ++V +++R+N V+   R
Sbjct: 831 QHKLSDQPRSRNNSISNVSHRERSNSVSSKSR 862


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 160 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 2
           F  +L     T + +SF F+T  +  +  +  LF  H F+ S ++   N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,526
Number of Sequences: 5004
Number of extensions: 56913
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)