Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00176
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   101   4e-22
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   100   2e-21
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156...    28   6.0  
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937...    28   7.9  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  101 bits (243), Expect = 4e-22
 Identities = 48/75 (64%), Positives = 56/75 (74%)
 Frame = +2

Query: 35  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 214
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 215 CQVAYSRIEGDHIGA 259
            Q+ Y+ I GD + A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 27/57 (47%), Positives = 46/57 (80%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESTKFNAEVHRAHIFGLHVAEYMRSLEQDDED 680
           GA+KGA+DGGL++PHS KRF G+  +  + ++++HR +I+G HVA+YMRS+ +++ +
Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPE 214



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 40/80 (50%), Positives = 43/80 (53%)
 Frame = +1

Query: 259 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 438
           AAYSHELPRYG++VGLTNYAAAY TG                          +Y VEP D
Sbjct: 75  AAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPAD 134

Query: 439 NGPGAFRCYLDVGLARTTTG 498
                FR  LDVGL RTTTG
Sbjct: 135 E-RRPFRALLDVGLIRTTTG 153


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 47/75 (62%), Positives = 55/75 (73%)
 Frame = +2

Query: 35  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 214
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 215 CQVAYSRIEGDHIGA 259
            Q+ Y+ I GD + A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 27/57 (47%), Positives = 46/57 (80%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESTKFNAEVHRAHIFGLHVAEYMRSLEQDDED 680
           GA+KGA+DGGL++PHS KRF G+  +  + ++++HR +I+G HVA+YMRS+ +++ +
Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPE 214



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 40/80 (50%), Positives = 43/80 (53%)
 Frame = +1

Query: 259 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 438
           AAYSHELPRYG++VGLTNYAAAY TG                          +Y VEP D
Sbjct: 75  AAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPAD 134

Query: 439 NGPGAFRCYLDVGLARTTTG 498
                FR  LDVGL RTTTG
Sbjct: 135 E-RRPFRALLDVGLIRTTTG 153


>01_01_0182 -
           1561779-1561873,1561977-1562050,1562140-1562207,
           1562279-1562371,1562521-1562604,1562697-1562752,
           1562843-1562950,1563051-1563225,1563237-1563422
          Length = 312

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 223 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 44
           HL  Y +  +  ++  FR       +NN  +TS ++++  T+P   Y +   +LF+ H  
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170

Query: 43  NESH 32
            + H
Sbjct: 171 GDIH 174


>09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,
            9370960-9371022
          Length = 1203

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = -3

Query: 364  FEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIFVGETHN 185
            FEA+  +    L ML+H    + S H++   ++  R   V+F  R+ +++C +++ +  +
Sbjct: 1018 FEALKKIELFNLKMLKHIKCFRLSPHDMFPSLSVLR---VSFCDRLKNISCTMYLSKLQH 1074

Query: 184  QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEF-YLVPLE 68
              +  C        +    S + +FP    L F YL  LE
Sbjct: 1075 LEVSYCNSITQAFGHNMNKSTVPTFPCLRYLSFAYLDGLE 1114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,090
Number of Sequences: 37544
Number of extensions: 369105
Number of successful extensions: 764
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)