Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00176
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 102 2e-22
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 100 9e-22
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 28 6.1
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 6.1
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 28 6.1
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 8.1
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 102 bits (245), Expect = 2e-22
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESTKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 683
GA+KGAVDGGL +PHS+KRFPGYD+ES F+AEVHR HIFG HVAEYMRSL ++DE+S
Sbjct: 193 GALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEES 250
Score = 92.7 bits (220), Expect = 3e-19
Identities = 45/81 (55%), Positives = 50/81 (61%)
Frame = +1
Query: 259 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 438
+AY+HELP +GVKVGLTNYAAAY TG EYNVE VD
Sbjct: 109 SAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVD 168
Query: 439 NGPGAFRCYLDVGLARTTTGA 501
PGAFRC+LDVGLART+TGA
Sbjct: 169 GSPGAFRCFLDVGLARTSTGA 189
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +2
Query: 95 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 220
RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 100 bits (240), Expect = 9e-22
Identities = 48/82 (58%), Positives = 52/82 (63%)
Frame = +1
Query: 256 CAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPV 435
CAAY+HELPRYGVKVGLTNYAAAY TG EYNVE +
Sbjct: 13 CAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESI 72
Query: 436 DNGPGAFRCYLDVGLARTTTGA 501
D PGAFRC+LDVGLART+TGA
Sbjct: 73 DGSPGAFRCFLDVGLARTSTGA 94
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPH 554
GA+KGAVDGGL +PH
Sbjct: 98 GALKGAVDGGLEIPH 112
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -3
Query: 370 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 203
++ + ++L D ++ L PS A+ +NKQ T V+F P G LA F
Sbjct: 180 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 235
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 118 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 11
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -3
Query: 370 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 203
++ + ++L D ++ L PS A+ +NKQ T V+F P G LA F
Sbjct: 340 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 395
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 50 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 145
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -3
Query: 277 THVNKQRTNMVTFNPRVGHLACY---IFVGETHNQTIFRCVIFVLVLNNEAFTSIII-SF 110
+HV K TN+V+ PR A Y I+ E N + C + VL+ + +++ +I SF
Sbjct: 280 SHVFKVMTNVVSMRPRFDFTADYLVRIYRAECVNLRL-HCNLIKGVLDKQGYSAFLIASF 338
Query: 109 P 107
P
Sbjct: 339 P 339
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 35 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 121
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,359,215
Number of Sequences: 59808
Number of extensions: 442910
Number of successful extensions: 1276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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