Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00175
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   1.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.6  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   3.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.9  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   5.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 79   DCAPGSTWSNQCNSC 123
            +CAPG  W N  N C
Sbjct: 1306 NCAPGLHWDNNKNIC 1320



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 196  DCAPKTMWKNECNTC 240
            +CAP   W N  N C
Sbjct: 1306 NCAPGLHWDNNKNIC 1320


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +3

Query: 255 GKPMCTKMGCISYNNFGSGVTEKLETKGTEIPELRSSQNTTKAIVCVANRMFIKDCNTCW 434
           G   C    CI    F +G  EK  + G++        +  +A  C      + DC   +
Sbjct: 120 GSLACGDGNCIERGLFCNG--EKDCSDGSDENTCDIDNDPNRAPPCDPAVCVLPDC---F 174

Query: 435 CNEDGTT 455
           C+EDGTT
Sbjct: 175 CSEDGTT 181


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 223 NECNTCWCTSEVNPC 267
           N C TC+C +  N C
Sbjct: 691 NPCTTCFCENGNNKC 705


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 455 GSTVFVTPASVAVLDEHSVRDA 390
           G T+ VTP+ + VLD+ +++ A
Sbjct: 173 GRTLTVTPSHLLVLDDRTMKYA 194


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 647 LPSSLPSYKNTM-YPQNYIGIY 585
           LP SL   +  + YPQNYI  Y
Sbjct: 25  LPPSLSDTRPMLPYPQNYINSY 46


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -2

Query: 663 WFFSSASKQPTLVQEYNVPSELHRHLLQPIWNVS 562
           W  +S+   P  +     PS+    + QP+ N++
Sbjct: 324 WSLTSSPPPPYQISAQPTPSQSPNQIYQPVTNLT 357


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -2

Query: 657 FSSASKQPTLVQ--EYNVPSELHRHLLQPIWNVSFG 556
           F +  + P + Q  E    + L RHL +  W  SFG
Sbjct: 214 FDTEGRLPPVWQGGESEALARLERHLERKAWVASFG 249


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 149 MAYPSALHLQLLHWFDHVDPGAQSLPWISSD 57
           + +  A  L LLH  D + PG  S   +S D
Sbjct: 178 LEFKGAQDLSLLHVSDSLSPGIYSEQSLSPD 208


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 226 ECNTCWCTSEVNPCAL 273
           ECNT  C  + N C+L
Sbjct: 505 ECNTYACEFDGNDCSL 520



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 342 EIPELRSSQNTTKAIVCVANRMFIKDCNTCWCNEDG 449
           ++ + R   N  K  V   N    ++CNT  C  DG
Sbjct: 480 DLEKQRQQCNQNKCPVKRGNGRCDEECNTYACEFDG 515


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,697
Number of Sequences: 336
Number of extensions: 4690
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)