Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00175
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    32   0.074
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    28   1.6  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   2.8  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    27   3.7  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   4.8  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   6.4  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   6.4  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    25   8.5  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = -3

Query: 293 ITDAPHLSAHGFTSEVHQHVLH-SFFHIVFGAQSFLGSSMCSAQASSLQMAYPSA 132
           I ++P+LSA+  + EVHQ ++  +F + +F A +    S  S++ ++++ A  SA
Sbjct: 213 INESPNLSAYEVSDEVHQPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKSA 267


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 128 AMPMDTPFVVTKPVLNTLTSLRKTVRRRLCGKMNATRVGALR 253
           A P DT  + TKP  NTL S+ K+    L   +N T    +R
Sbjct: 622 APPADTKKIKTKPKSNTLGSMFKSSLVSLMSTINETNAHYIR 663


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 71  KAEIALRDRRGRTSVTVVGAMPMDTPFVVT 160
           K EI    + GRT++T + + P+DTP  VT
Sbjct: 631 KLEIYHDTKAGRTTITNITSEPLDTPEQVT 660


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 144 VSIGIAPTTVTLVRPRRSRSAISALDQ-LRLLGSVISDAFHP 22
           +++   PT  TL++   SR  +S  DQ +R L  ++   FHP
Sbjct: 352 LNLSKTPTRETLIKDAISRGVLSFCDQAIRDLYQILEVEFHP 393


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 376 PKQSFASRTECSSRTATLAGVTKTVLPSTAPEESAYPCCRK 498
           PKQS   R   +S  A L+ VTK   PS+      Y   R+
Sbjct: 26  PKQSQIKRPYTASTVAVLSEVTKAYYPSSQQALKLYDLLRE 66


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 172 EHIDEPKKDCAPKTMWKNECNTCWCTSE 255
           EH   P K CA + + +N     WC SE
Sbjct: 101 EHFSFPVKCCAYQFILRNRFLLIWCNSE 128


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 509 DPENLNPKPATPKECKPNET 568
           DPE+L PK  TP E +P  T
Sbjct: 350 DPESLLPKLPTPSELRPFPT 369


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 659 SFPRLPSSLPSYKNTMYPQNYIGI-YCN 579
           +F      LPSY+N+MY + Y G+ Y N
Sbjct: 336 NFESFNQPLPSYQNSMYDRLYDGLSYSN 363


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 121 NCYTGSTTSIPERNLCLGSA 62
           N + GSTT +P+ N  +GSA
Sbjct: 256 NFHGGSTTFVPQGNFVIGSA 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,456,696
Number of Sequences: 5004
Number of extensions: 77213
Number of successful extensions: 263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)