Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00175
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 33 0.31
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 29 2.9
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459... 29 3.8
01_06_0196 - 27410837-27413296 29 3.8
12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973... 29 5.1
08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931 29 5.1
06_01_1013 - 7931756-7935109 29 5.1
01_06_0199 - 27467548-27469992 29 5.1
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 28 6.7
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563... 28 6.7
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984... 28 6.7
10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708 28 8.8
06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503 28 8.8
06_03_0229 - 18481001-18481101,18481397-18481634 28 8.8
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 28 8.8
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 631 PRTRIQCTLRITSASIATNLE-CFIRLALLWRRWFRVQVLGISSPSSGSMGTQTLRVQ 461
P T ++C LR+ A+ A NLE C I L +R F V L I S S T + Q
Sbjct: 363 PVTLMECFLRVAEANTANNLETCGILAGTLKKRTFYVTTLIIPKQRSTSDSHSTQKCQ 420
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 494 RQHGYADSSGAVEGSTVFVTPASVAVLDEHSVRDANDCF 378
R+ G A + A +TV VTP A+L++ + A +CF
Sbjct: 166 RESGVAAKAVAAGATTVDVTPECAAMLEKLMLAQAQECF 204
>05_05_0138 +
22644263-22644460,22644617-22644711,22645786-22645949,
22646725-22646970,22647600-22647944,22648516-22648586,
22648676-22648794,22650508-22650637,22650806-22650857,
22650974-22651136,22651244-22651418,22651772-22651942,
22652275-22652388,22652559-22652609
Length = 697
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 341 GSFGFQFFRDATSEIVITDAPHLSAHGFTSEVHQHVLHSFFHIVFG 204
GSFGFQ F + E + + HG ++V + +LHSF ++G
Sbjct: 189 GSFGFQAFTEKDLEFI---SKFKEEHG--ADVFRQILHSFCPSIYG 229
>01_06_0196 - 27410837-27413296
Length = 819
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -2
Query: 717 WQVLTVSCWDARTFLDRVWFFSSASKQPTLVQEYNVPSELHRHL 586
W +TV L R+W F S K LV EY L RHL
Sbjct: 567 WSEMTVLGRINHINLVRIWGFCSERKHKLLVYEYVENQSLDRHL 610
>12_02_0780 +
23094989-23095380,23096132-23096573,23096687-23097311,
23098240-23098280,23098371-23098439,23098779-23098879,
23099422-23099500,23099946-23100044,23100123-23100191,
23100283-23100332,23100416-23100497,23100997-23101091,
23101263-23101395
Length = 758
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 723 PGWQVLTVSCWDARTFLDRVWFFSSASKQPTLVQEYNVPSELHRH 589
P W L +SCW+ + L R F + L ++YNV +++ R+
Sbjct: 703 PQWTSLILSCWETDSQL-RPSFQQLLERLRELQRQYNVQTQMQRN 746
>08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931
Length = 461
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 154 SDEACAEHIDEPKKDCAPKTMWKNECNTCWCTSEVNPC 267
S AC ++ ++C+P+ KNEC T EV PC
Sbjct: 267 SGTACK--VEYQVEECSPENRAKNECIDVKVTKEVIPC 302
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 587 RCRCNSEGTLYSCTRVGCLEAEEK-NHTLSRKVRASQQETVKTCQP 721
RCRC S G + C +V LE E + N RK + + C P
Sbjct: 469 RCRCGSSGQMVECYKV--LEEEFRCNKPCGRKKNCGRHRCSECCCP 512
>01_06_0199 - 27467548-27469992
Length = 814
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -2
Query: 717 WQVLTVSCWDARTFLDRVWFFSSASKQPTLVQEYNVPSELHRHL 586
W +TV L R+W F S K LV EY L RHL
Sbjct: 561 WAEMTVLGRINHMNLVRIWGFCSERKHKLLVYEYVENQSLDRHL 604
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/64 (21%), Positives = 28/64 (43%)
Frame = +2
Query: 509 DPENLNPKPATPKECKPNETFQIGCNRCRCNSEGTLYSCTRVGCLEAEEKNHTLSRKVRA 688
DP+ + + + PN+ F +G N+ R + + + + EA +K + +
Sbjct: 259 DPKTRSMREDPLPDADPNDKFYVGDNQNRLSGQALEFKQLNIHAWEAFDKGQDIHMQAAP 318
Query: 689 SQQE 700
SQ E
Sbjct: 319 SQAE 322
>05_05_0285 -
23855219-23855371,23855391-23856063,23856239-23856301,
23856478-23856604,23856751-23856897,23856968-23856974,
23857203-23857379
Length = 448
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 195 RLCAEDY-VEK*MQHVLVHFGGKPMCTKMGCISYNNFGSGVTEKLETKGTEIPELRSSQN 371
+LC ED +E L F +C + G ++++ G E++ +PE S
Sbjct: 160 KLCDEDAPLESTASRPLSGFFFNTLCKEPGYLAFDTIRCGKLLYPESRFAALPEPVSFLA 219
Query: 372 TTKAIVCVANR 404
+T+ +VCV +
Sbjct: 220 STRGLVCVCGK 230
>04_04_0850 -
28697462-28697684,28697894-28697971,28698103-28698495,
28698590-28698893,28698978-28699188,28699943-28700674
Length = 646
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +3
Query: 342 EIPELRSSQNTTKAIVCVANRMFIKDCNTCWCNEDGTTFYCTRRVCVPMLPEDGD 506
E+ ++ Q T I C A+R +K C +Y C+ LPE D
Sbjct: 378 EVGDIAIWQKPTNHIHCKASRKVVKSPPFCSNKNPDAAWYDKMEACITPLPEVSD 432
>10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708
Length = 567
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 533 VSGSSSRDLVTVFRQHGYADSSGAVEGSTVFV 438
++ + R + V R+HG ADS G T+FV
Sbjct: 395 IASVTERHRLAVAREHGIADSKGTTIPLTIFV 426
>06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503
Length = 186
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +1
Query: 67 IQGRDCAPGSTWSNQCNSCRCNADGYAICSDEACAEHID 183
++ + C P ++ N NSCR C+ + +H D
Sbjct: 25 VEAKSCCPSTSARNVYNSCRFAGGSREACAKLSTCKHFD 63
>06_03_0229 - 18481001-18481101,18481397-18481634
Length = 112
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +1
Query: 67 IQGRDCAPGSTWSNQCNSCRCNADGYAICSDEACAEHID 183
++ + C P ++ N NSCR C+ + +H D
Sbjct: 25 VEAKSCCPSTSVRNVYNSCRFAGGSREACAKLSTCKHFD 63
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 558 GLHSFGVAGFGFKFSGSRHRLPAAW 484
G+H V+G G+ ++GSR + AW
Sbjct: 652 GVHCLAVSGTGYLYTGSRDKSIKAW 676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,297,657
Number of Sequences: 37544
Number of extensions: 543277
Number of successful extensions: 1793
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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