Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00175
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 142 YAICSDEACAEHIDEPKKDCAPK 210
           + IC  E  ++  DE KKD A K
Sbjct: 34  FTICVPEIYSKECDEMKKDSAVK 56


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 142 YAICSDEACAEHIDEPKKDCAPK 210
           + IC  E  ++  DE KKD A K
Sbjct: 34  FTICVPEIYSKECDEMKKDSAVK 56


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 142 YAICSDEACAEHIDEPKKDCAPK 210
           + IC  E  ++  DE KKD A K
Sbjct: 34  FTICVPEIYSKECDEMKKDSAVK 56


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 702 VSCWDARTFLDRVWFFSSASKQPTLV 625
           ++CWD  T L+   F   A    T+V
Sbjct: 321 IACWDTNTELNPNTFILVAENNTTMV 346


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 291 YNNFGSGVTEKLETKGTEIPEL 356
           +N FG     KL  K   +P+L
Sbjct: 49  FNRFGDDTESKLPVKAITLPDL 70


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 497 FRQHGYADSSGAVEG 453
           +R HGYA   G V+G
Sbjct: 615 YRMHGYASVVGPVKG 629


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 128 HLQLLHWFDHVDPGAQSLPWISSDFLGVLLVMHSTLVHMGLP 3
           H  L H+  H DPG   LP  +        ++ +T+ H+  P
Sbjct: 275 HTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDP 316


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 153  TNGVSIGIAPTTVTLVRPRRSRSAISALDQL 61
            T+  S  I+P +     PRR RS+ S+L  L
Sbjct: 1822 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTL 1852


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 153  TNGVSIGIAPTTVTLVRPRRSRSAISALDQL 61
            T+  S  I+P +     PRR RS+ S+L  L
Sbjct: 1818 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTL 1848


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 572 GMFHSACTPLASLVSGSSSRDLVTVFRQ 489
           GMF + C  +    +  + R  +T+F Q
Sbjct: 148 GMFEALCNHIKYSTNKGNIRSAITIFPQ 175


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 442 KTVLPSTAPEESAYPCCRKTVTRSRELEPETS--DAKGVQ 555
           K   PS+    ++ P   +   ++  ++PET+  D + VQ
Sbjct: 118 KLAAPSSQASPTSIPYATRAEIKTESIQPETTKVDTREVQ 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,573
Number of Sequences: 438
Number of extensions: 5822
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)