Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00175
(736 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61840.1 68414.m06978 DC1 domain-containing protein similar t... 33 0.20
At4g37120.1 68417.m05257 expressed protein 32 0.45
At1g28080.1 68414.m03437 expressed protein 31 0.79
At3g13062.2 68416.m01631 expressed protein weak similarity to SP... 30 1.4
At3g13062.1 68416.m01629 expressed protein weak similarity to SP... 30 1.4
At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1 (... 29 2.4
At1g14770.2 68414.m01766 expressed protein 29 2.4
At1g14770.1 68414.m01765 expressed protein 29 2.4
At4g27660.1 68417.m03978 expressed protein ; expression support... 29 3.2
At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1) i... 29 3.2
At1g07130.1 68414.m00758 OB-fold nucleic acid binding domain-con... 29 3.2
At2g14580.1 68415.m01633 pathogenesis-related protein, putative ... 29 4.2
At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containi... 29 4.2
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ... 28 5.6
At2g28050.1 68415.m03401 pentatricopeptide (PPR) repeat-containi... 28 5.6
At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas... 28 5.6
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein... 28 7.4
At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa... 27 9.8
At5g27880.1 68418.m03344 zinc finger (C2H2 type) family protein ... 27 9.8
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 27 9.8
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 27 9.8
At3g20320.2 68416.m02575 mce-related family protein contains Pfa... 27 9.8
At3g20320.1 68416.m02574 mce-related family protein contains Pfa... 27 9.8
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ... 27 9.8
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 27 9.8
>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
hypothetical protein GI:3184279 from [Arabidopsis
thaliana]; contains Pfam profile PF03107: DC1 domain
Length = 814
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 521 LNPKPATPKECKPNETFQIGCNRCRCNSEGTLYSCTRVGC 640
L+P P T +T CN C NS G +Y C+R C
Sbjct: 592 LHPHPLTLNAVSKYDTGDFECNACVRNSGGFVYMCSRKEC 631
>At4g37120.1 68417.m05257 expressed protein
Length = 536
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 509 DPENLNPKPATPKECKPNETFQIGCNRCRCNSEGTLYSCTRVGCLEAEEKNHTLSRKVRA 688
DP+ + + + PNE F +G N+ R + + + + EA +K H + +
Sbjct: 259 DPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKQINIHSCEAFDKGHDMHMQAAP 318
Query: 689 SQQE 700
SQ E
Sbjct: 319 SQAE 322
>At1g28080.1 68414.m03437 expressed protein
Length = 291
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 28 ECITNNTPKKSELIQGRDCAPGSTWSNQCNSCRCNADGYAICSDEACAEHIDEPK 192
E TNN + D APGST +S DG A +D C+ ++D+ K
Sbjct: 27 ETTTNNQDPSGDTCSVSDPAPGSTDYYNISSSPVKDDGTAPKNDVVCSINVDDNK 81
>At3g13062.2 68416.m01631 expressed protein weak similarity to
SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
{Homo sapiens}
Length = 440
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 447 RLRYTSKCCSP**TFGSRRKRLLWSCFETTLTQVFR 340
R+ YT+KCC P T GS K L + FE +V R
Sbjct: 116 RISYTAKCCKP--TDGSPMKYLSTTVFEDCSPEVLR 149
>At3g13062.1 68416.m01629 expressed protein weak similarity to
SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
{Homo sapiens}
Length = 403
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 447 RLRYTSKCCSP**TFGSRRKRLLWSCFETTLTQVFR 340
R+ YT+KCC P T GS K L + FE +V R
Sbjct: 116 RISYTAKCCKP--TDGSPMKYLSTTVFEDCSPEVLR 149
>At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1
(PLDGAMMA1) identical to phospholipase D gamma 1
SP:Q9T053 from [Arabidopsis thaliana]
Length = 858
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -3
Query: 548 PLASLVSGSSSRDLVTVFRQHGYADSSGAVEGSTVFVTPASVAVLDEHSVRDANDCFG 375
P L SG+ L + G GAV G ++ TP L + V N+C G
Sbjct: 149 PTEQLCSGNRIEGLFPILNSSGKPCKQGAVLGLSIQYTPMERMRLYQMGVGSGNECVG 206
>At1g14770.2 68414.m01766 expressed protein
Length = 429
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 RDPENLNPKPATPKECKPNETFQIGCNRC-RCNSEGTLYSCTRVGC 640
+DP ++ P T P+ + N C +C EGTL C+R C
Sbjct: 320 KDPPSIKKNPNTYLNLLPSSSRTRPENVCWKCEKEGTLLICSRSEC 365
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 348 PELRSSQNTTKAIVCVANRMFIKDCNTCW-CNEDGTTFYCTRRVC 479
P ++ + NT ++ ++R + N CW C ++GT C+R C
Sbjct: 323 PSIKKNPNTYLNLLPSSSRT--RPENVCWKCEKEGTLLICSRSEC 365
>At1g14770.1 68414.m01765 expressed protein
Length = 429
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 RDPENLNPKPATPKECKPNETFQIGCNRC-RCNSEGTLYSCTRVGC 640
+DP ++ P T P+ + N C +C EGTL C+R C
Sbjct: 320 KDPPSIKKNPNTYLNLLPSSSRTRPENVCWKCEKEGTLLICSRSEC 365
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 348 PELRSSQNTTKAIVCVANRMFIKDCNTCW-CNEDGTTFYCTRRVC 479
P ++ + NT ++ ++R + N CW C ++GT C+R C
Sbjct: 323 PSIKKNPNTYLNLLPSSSRT--RPENVCWKCEKEGTLLICSRSEC 365
>At4g27660.1 68417.m03978 expressed protein ; expression supported
by MPSS
Length = 208
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Frame = +1
Query: 181 DEPKKDCAPKTMWKNECNTCWC--TSEVNPCALRWGASVIT-ISEVASRKNWKPKEPKY 348
D P +C +E C+C V PCA W AS T E WKP Y
Sbjct: 82 DSPASECDDDVAIVHEKGQCYCYVCDVVAPCAY-WTASFATPHCEALENSKWKPIRKLY 139
>At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1)
identical to GB:M90508 SP|P33154
Length = 161
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 563 ETFQIGCNRCRCNSEGTLYSC 625
++ ++GC + RCN+ GT+ SC
Sbjct: 127 KSVRLGCAKVRCNNGGTIISC 147
>At1g07130.1 68414.m00758 OB-fold nucleic acid binding
domain-containing protein contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 160
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 581 NQFGMFHSACTPLASLVSGSSSRDLVTVFRQHGYADSSGAV 459
N F + AC +V SRDL F + G D +G V
Sbjct: 28 NSFSLLGGACVSRVEIVGTIVSRDLTPKFLKFGVDDGTGCV 68
>At2g14580.1 68415.m01633 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 161
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 572 QIGCNRCRCNSEGTLYSC 625
++GC + RCN+ GT+ SC
Sbjct: 130 RLGCAKVRCNNGGTIISC 147
>At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containing
protein contains multiple Pfam domains: PF01535: PPR
repeat
Length = 538
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 299 IVITDAPHLSAHGFTSEVHQHVLHSFFHIVFGAQSFLGSSMCSA 168
+V+ P+LS+ T VH H+ S FH+ Q+ L S S+
Sbjct: 131 LVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASS 174
>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 596
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Frame = +1
Query: 1 DGKPMCTRVECITNNTPKKSE-----LIQGRDCAPGSTWSNQCNSCRCNADGYAICSDEA 165
D +CTR + + + L QG A G W + C + + Y C D
Sbjct: 443 DDYSLCTRCAALPRKVKHRCDDHYLSLCQGVGSASGDLWCDICETKTDPSVFYYTCDDCG 502
Query: 166 CAEHIDEPKKDC 201
+ HID DC
Sbjct: 503 LSLHIDCVLGDC 514
>At2g28050.1 68415.m03401 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 462
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 487 CCRKTVTRSRELEPETSDAKGVQA 558
CC +TR+REL E KGV+A
Sbjct: 221 CCNGEITRARELVEEMGLVKGVKA 244
>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
reticulum-type (ACA6) (ECA3) nearly identical to
SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 998
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 581 CNRCRCNSEGTLYSCTRVGCLEAEEKNHTLSRKVRASQQETVKTCQPGQE 730
CN+ CN +G++ T G E E + ++ + KT GQ+
Sbjct: 521 CNKILCNGDGSVVPLTAAGRAELESRFYSFGDETLRCLALAFKTVPHGQQ 570
>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 535
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 509 DPENLNPKPATPKECKPNETFQIGCNRCRCNSEGTLYSCTRVGCLEAEEKNHTLSRKVRA 688
DP+ + + + PN+ F +G N+ R + + + + EA +K + +
Sbjct: 259 DPKTRSMREDPLPDADPNDKFYLGDNQYRNSGQALEFKQLNIHSWEAFDKGQDMHMQAAP 318
Query: 689 SQQETV-KTCQPGQE 730
SQ E + K+ Q +E
Sbjct: 319 SQAELLYKSFQVAKE 333
>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 529
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 320 KIGNQRNRNT*VKVVSKHDQSNRLRREPNVH 412
K G++ RN V + KH Q +L + PN H
Sbjct: 332 KEGDELRRNADVAEILKHTQFPKLTKNPNCH 362
>At5g27880.1 68418.m03344 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 278
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 662 GSFPRLPSSLPSYKNTMYPQN 600
GS R+P LPSY N +YP N
Sbjct: 191 GSTSRVPDPLPSY-NNLYPSN 210
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = -2
Query: 717 WQVLTVSCWDARTFLDRVWFFSSASKQPTLVQEYNVPSELHRHLLQPIWNVSFGLHSFGV 538
+++L W FL W + P V + + S L L I ++ G H F V
Sbjct: 856 YRLLATDFWPCGNFL---WDINRCYLSPWSVLQCYLESTLQVLFLFRISSL-VGFHHFSV 911
Query: 537 AGFGFKFSG 511
+ FG KF+G
Sbjct: 912 SQFGVKFAG 920
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 406 IRFATQTIALVVF*DDLNSGISVPLVSNFSVTPLPKLL*LMHPILVHM 263
+ F T ++ V LN + + + S+ P PKL+ L+H I H+
Sbjct: 248 VEFETGSLTKRVVWKSLNKKLFLLVTETLSLDPEPKLISLIHRIFSHV 295
>At3g20320.2 68416.m02575 mce-related family protein contains Pfam
PF02470: mce related protein
Length = 282
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 654 SSASKQPTLVQEYNVPSELHRHLLQPIWNVSFGLHSFGVAGFG-FKFSGSR-HRLPAAWV 481
S K P V +VP + R L+P+ + FG S G G F SG+ L AW+
Sbjct: 59 SDGGKNPLTVV-LDVPRNIWRQTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWL 117
Query: 480 R 478
R
Sbjct: 118 R 118
>At3g20320.1 68416.m02574 mce-related family protein contains Pfam
PF02470: mce related protein
Length = 381
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 654 SSASKQPTLVQEYNVPSELHRHLLQPIWNVSFGLHSFGVAGFG-FKFSGSR-HRLPAAWV 481
S K P V +VP + R L+P+ + FG S G G F SG+ L AW+
Sbjct: 59 SDGGKNPLTVV-LDVPRNIWRQTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWL 117
Query: 480 R 478
R
Sbjct: 118 R 118
>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +1
Query: 127 CNADGYAICSDEACAEHIDEPKKDCAPKTMWKNE----CNTCWCTSEVNPCALRWGASVI 294
C A + IC+ + ID PKK P T + + CN C ++ P + + + +
Sbjct: 174 CQAFMHPICAMKPIPFLIDPPKKHIHPLTFFPRQTSLTCNVCGLLRKIYPTYVCFRCNFV 233
Query: 295 T 297
T
Sbjct: 234 T 234
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 521 LNPKPATPKECKPNETFQIGCNRCRCNSEGTLYSCTRVGC 640
L+P P K N F+ C C S G Y CT GC
Sbjct: 416 LHPHPIEQKVVHENHEFE--CAACMRKSSGFGYVCTINGC 453
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,494,562
Number of Sequences: 28952
Number of extensions: 425155
Number of successful extensions: 1423
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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