Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00174
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.4  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   3.2  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    26   5.5  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 340 TSYAQDCEGNGRFAIFIVRDVYCVAYLHQRNLI 242
           TSYA   E    F  F +    C+ YLH + ++
Sbjct: 113 TSYAYFRENPAEFVRFCIAICKCIEYLHSKGMV 145


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 554 MLASKGVRHVFMLTPALTFARIRKLASVGRHLQMIMQSFRCIRG 423
           MLASK  R   M+  ALT   I ++ ++ RHL  + + + C  G
Sbjct: 741 MLASKACRSSVMIGRALT---ISEMNTIVRHLAELSKPWNCPHG 781


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 436 RKLCIIICKCRPTLASLRIRANVSAGVNINT*RTPLLANIHER 564
           R+  III K    +A LR   NV AGV      T  + N+H+R
Sbjct: 103 REAGIIIGKAGKNVAELRSTTNVKAGV------TKAVPNVHDR 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,060
Number of Sequences: 5004
Number of extensions: 47287
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)