Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00174
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    30   1.4  
10_01_0194 + 2130274-2131725                                           28   5.7  
09_04_0414 - 17393780-17394826                                         28   7.6  

>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 480  RKCRTTFTNDYAKFSLHSWFSKLCRFFNRHQSARTVILRVVS 355
            R CR +   D++KF+L SW S L    +  QS R+ I  ++S
Sbjct: 3917 RACRKSSKGDFSKFALGSWVSDLI-LSSCSQSIRSEICTLIS 3957


>10_01_0194 + 2130274-2131725
          Length = 483

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +2

Query: 251 SLMKIRYTVDVTNYENSETSVTFAILGVTGHTNVWETTRRITVRAL 388
           SL +  + +D+TN+ +S ++    I+   GH++  +  +R+T+R L
Sbjct: 385 SLFEQGHRLDITNFASS-SAAPLHIIPFAGHSSALKDLQRVTLREL 429


>09_04_0414 - 17393780-17394826
          Length = 348

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 313 YLRNPGRNWSHKCVGDYAKDH 375
           YL++  R WS  C G Y  DH
Sbjct: 241 YLQSAARTWSFICAGKYPIDH 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,578,804
Number of Sequences: 37544
Number of extensions: 291751
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)