Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00174
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    29   3.4  
SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 13   LYECLRACEGPSNIHSQT*R-LCKWVRYSICEPVCASSYTCL 135
            ++ CL AC  PS     T R  C  +   +C PVC   +TCL
Sbjct: 1264 VFTCLFACVYPSVSRVFTCRSACVHLSVRVCSPVCPRVFTCL 1305


>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 379

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 536 VRHVFMLTPALTFARIRKLASVGRHLQMIMQSFR 435
           VRH   + PA T + IR+     RHL   +QSFR
Sbjct: 309 VRHPAAIGPARTRSGIRRWTGNRRHLSGFLQSFR 342


>SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 91  YSICEPVCA--SSYTCLRMSHEFLLLFNS 171
           Y+ C P+C    SY   +  H FLL++NS
Sbjct: 354 YNPCSPLCCPGGSYEWQQDGHHFLLMYNS 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,931,984
Number of Sequences: 59808
Number of extensions: 373011
Number of successful extensions: 781
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)