Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00174
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-5|AAA81483.2|  174|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...    29   3.9  
CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical ...    29   3.9  
AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical ...    29   3.9  
AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical...    29   3.9  
AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein...    29   3.9  
Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U40799-5|AAA81483.2|  174|Caenorhabditis elegans Hypothetical
           protein F42C5.6 protein.
          Length = 174

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = +2

Query: 239 FYEISLMKIRYTVDVTNYENSETSVTFAILGVTGHTNVWETTRRITVRAL*CLLKNRHNF 418
           FY  SL+  + + +     +  T+V+F +LG     ++ +T  +I   A+ C     H  
Sbjct: 24  FYNFSLLLAQNSEETQTEGSIGTTVSFKVLGFEILKDIIQTVVKIESDAIWC---PTHRV 80

Query: 419 ENHECSENFA*SFVNVVLHL--RVCVFVRM*VPVLT*TRDVPLCLPTS 556
            N +C E    SF     HL    C  +R+ + ++     + L LP S
Sbjct: 81  GN-QCPEETLLSFYKCCGHLNKECCFHLRVWIVIMIIVLPICLVLPAS 127


>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
           nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 284 TNYENSETSVTFAILGVTGHTNVWETT 364
           TN + S  S TFA+ G+ G+  VW  T
Sbjct: 448 TNPQISSMSTTFALAGLVGYHTVWGVT 474


>CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical
           protein K09E10.1 protein.
          Length = 692

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 100 CEPVCASSYTCLRMSHEFLLLFNSS 174
           CEP+ A++  C++   EF+ L NSS
Sbjct: 509 CEPLAANTTGCIKKLDEFVQLLNSS 533


>AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical
           protein Y79H2A.11 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 453 DYAKFSLHSWFSKLCRFFNRHQSARTVILRVVS--HTFV*PVTPRIAKV 313
           DY++ +  SW   L   +NRH   + + L VV   H     V PRI KV
Sbjct: 296 DYSRAAEPSWRLTLANRYNRHLETKKLALSVVEPCHENTDFVFPRIIKV 344


>AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical
           protein Y79H2A.11 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 453 DYAKFSLHSWFSKLCRFFNRHQSARTVILRVVS--HTFV*PVTPRIAKV 313
           DY++ +  SW   L   +NRH   + + L VV   H     V PRI KV
Sbjct: 296 DYSRAAEPSWRLTLANRYNRHLETKKLALSVVEPCHENTDFVFPRIIKV 344


>AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein
           protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 453 DYAKFSLHSWFSKLCRFFNRHQSARTVILRVVS--HTFV*PVTPRIAKV 313
           DY++ +  SW   L   +NRH   + + L VV   H     V PRI KV
Sbjct: 296 DYSRAAEPSWRLTLANRYNRHLETKKLALSVVEPCHENTDFVFPRIIKV 344


>Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical
           protein R06C7.9 protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 521 MLTPALTFARIRKLASVGRHLQMIMQSFRCIRGFQSCV 408
           MLT  +   +   L+S+ RH+ M    FRC +  ++C+
Sbjct: 493 MLTCGVCTKKFNTLSSIRRHMSMEYSIFRCQQCGRNCI 530


>U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical
           protein T14B4.8 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 522 YVNTGTHIRTNTQTRKCRTTFTNDYAKFSLHSWFSKLC 409
           YV+T TH+R N Q  + + T  +D+    +  W   +C
Sbjct: 56  YVSTSTHLRLNHQGSELQVTDPSDFPLLDI--WSENVC 91


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 456 NDYAKFSLHSWFSKLCRFFNRHQ 388
           ND      H+  SKLCRFFN+ Q
Sbjct: 335 NDSRVVREHTASSKLCRFFNKRQ 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,904
Number of Sequences: 27780
Number of extensions: 277859
Number of successful extensions: 578
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)