Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00173
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    111   4e-25
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   111   4e-25
12_02_0154 + 14494319-14495857                                         28   6.8  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.0  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  111 bits (267), Expect = 4e-25
 Identities = 52/81 (64%), Positives = 63/81 (77%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
           GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KD
Sbjct: 82  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 141

Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
           EL+++GN +E VS SAALI Q
Sbjct: 142 ELVLDGNDIELVSRSAALINQ 162



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/80 (50%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
 Frame = +1

Query: 19  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 195
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 196 GSKKELAAVRTVCSHVENMI 255
           G+++ +AA+RT  SHV+N+I
Sbjct: 61  GTRRTMAAIRTAISHVQNLI 80



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = +2

Query: 506 YVKNKDIRKFLDGLYVSEKTTVVLD 580
           +VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 165 HVKNKDIRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  111 bits (267), Expect = 4e-25
 Identities = 52/81 (64%), Positives = 63/81 (77%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
           GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KD
Sbjct: 75  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 134

Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
           EL+++GN +E VS SAALI Q
Sbjct: 135 ELVLDGNDIELVSRSAALINQ 155



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 37/73 (50%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
 Frame = +1

Query: 46  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 216
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 217 AVRTVCSHVENMI 255
           A+RT  SHV+N+I
Sbjct: 61  AIRTAISHVQNLI 73



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = +2

Query: 506 YVKNKDIRKFLDGLYVSEKTTVVLD 580
           +VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 158 HVKNKDIRKFLDGIYVSDKGTITED 182


>12_02_0154 + 14494319-14495857
          Length = 512

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 106 PRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKE*LKA 273
           P+ VL+   KH+  D+   +  L ++E+ F +K+ L     V  H +NM++E LK+
Sbjct: 250 PKPVLRP--KHVIGDVGNSDDPLHELEQSFFNKRFLIVFEDVDIHKKNMLEELLKS 303


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 115 VLKRNF-KHLAVDIRMVNPRLLKVE 186
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,251,327
Number of Sequences: 37544
Number of extensions: 331181
Number of successful extensions: 745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)