Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00173
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        100   2e-21
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                28   5.3  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     28   5.3  
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)                    28   5.3  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   28   7.0  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   7.0  
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)         27   9.2  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 44/80 (55%), Positives = 61/80 (76%)
 Frame = +1

Query: 19  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 198
           MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++  V    ++V+ WF 
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616

Query: 199 SKKELAAVRTVCSHVENMIK 258
           S+KELA V+T+ +H+ENMIK
Sbjct: 617 SRKELACVKTIITHIENMIK 636



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 32/49 (65%), Positives = 40/49 (81%)
 Frame = +3

Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 401
           KGV  G++YKMRAVYAHFPIN    E  +++E+RNFLGEKY+RRV+M P
Sbjct: 636 KGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +2

Query: 509 VKNKDIRKFLDGLYVSEKTTVV 574
           VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 10  VKNKDIRKFLDGVYVSEKTTIV 31


>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 338 ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFS 243
           +T+  D   G VS H+THLV  A S +++ F+
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAYLSFA 204


>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 180 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 88
           L  TR+ +  V+S   EV  E S  P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 233 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 90
           QT++T A  F D       RRR F+  +S   C + L R+P  P++ T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 1   VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 114
           ++ +  +K++  + K K  DG+ VH K+   TV+ PRG
Sbjct: 98  LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 49  KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 183
           K+ DGL VH+ ++ V  K P+    + KR  + L A+ I + +P + KV
Sbjct: 4   KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52


>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
          Length = 197

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = -1

Query: 171 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 61
           TR YH NV   VF V        F  S G  N HQ  +  DR+P
Sbjct: 57  TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 33   SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 140
            S+ ++    R Y PC I SG++  APR    +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 457 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 338
           +P  I S    G+L  +T G I T      PKKL   +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 76   VKSRLVTVKGPRGVLKRNFKHL 141
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 487 AAELETSSKELPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIEL 335
           AAE++TS   L  + S S C      VT   IFT  MY  P+++ ++   L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284


>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
          Length = 428

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 302 SIHSTHLVLEAFSYSFIMF--STCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLK 129
           S+ S HL L    Y ++++  + C    L   +SFL P+H  +  R GF   +  A  + 
Sbjct: 185 SVISFHLTLSRKPYYYLLYILTPCSVLCLLTLTSFLIPSH--SGERIGFITTLLLAMTVY 242

Query: 128 FLL 120
            LL
Sbjct: 243 LLL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,266,992
Number of Sequences: 59808
Number of extensions: 391641
Number of successful extensions: 1011
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)