Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00173
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   107   8e-24
AC084159-13|AAK39352.1|  197|Caenorhabditis elegans F-box a prot...    31   0.50 
AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a...    28   4.6  
AC025726-2|AAO21421.1|  174|Caenorhabditis elegans Male abnormal...    28   4.6  
AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal...    28   4.6  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  107 bits (256), Expect = 8e-24
 Identities = 49/82 (59%), Positives = 61/82 (74%)
 Frame = +3

Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQK 434
           KGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  QK
Sbjct: 80  KGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQK 139

Query: 435 DELIIEGNSLEDVSSSAALIQQ 500
           DE+++EGN ++ VS +AA IQQ
Sbjct: 140 DEIVVEGNDVQFVSQAAARIQQ 161



 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 41/80 (51%), Positives = 60/80 (75%)
 Frame = +1

Query: 19  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 198
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 199 SKKELAAVRTVCSHVENMIK 258
            +KELAA+RTVCSH++NMIK
Sbjct: 61  VRKELAAIRTVCSHIKNMIK 80



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = +2

Query: 509 VKNKDIRKFLDGLYVSEKTTVVLDD 583
           VK KDIRKFLDG+YVSEKTT+V  D
Sbjct: 165 VKEKDIRKFLDGIYVSEKTTIVPTD 189


>AC084159-13|AAK39352.1|  197|Caenorhabditis elegans F-box a protein
           protein 16 protein.
          Length = 197

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 547 KTIQELSDILILDVVDC*MRAAELETS--SKELPSMISSSFCFGELTTVTP 401
           K I   S+ L+LD VD  +R+  ++ S  S E   +     CF ELT++ P
Sbjct: 30  KAIDNTSENLLLDGVDREIRSRRVQASLSSLETREIYLGGICFNELTSILP 80


>AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a
           protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
           FS  FI +++CE   + A ++F DPN
Sbjct: 7   FSVIFIAYNSCEAANIQADNTFADPN 32


>AC025726-2|AAO21421.1|  174|Caenorhabditis elegans Male abnormal
           protein 20, isoform b protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
           FS  FI +++CE   + A ++F DPN
Sbjct: 7   FSVIFIAYNSCEAANIQADNTFADPN 32


>AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal
           protein 20, isoform a protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
           FS  FI +++CE   + A ++F DPN
Sbjct: 7   FSVIFIAYNSCEAANIQADNTFADPN 32


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 261  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 398
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 401 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 267
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 147 NSQVFEVPFENSAGPFNCHQTRFHMDR 67
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 147 NSQVFEVPFENSAGPFNCHQTRFHMDR 67
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 254 IMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 132
           +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 280 LLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = +3

Query: 237 TCREHDKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG-EKYIRRVKMAPGVTV 413
           TC+   K  +     ++R++  +       T+ NS+  IR  LG   Y   ++     +V
Sbjct: 190 TCQGPPKSCSDPVHDRIRSITGYCNNRGKPTQANSVTAIRRLLGTTSYTDGLQAIRNTSV 249

Query: 414 VNSPKQKDELIIEGNSLEDVSSS 482
             SP     LI   N L D  S+
Sbjct: 250 TGSPLPSTRLI--SNKLHDEGST 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,955
Number of Sequences: 27780
Number of extensions: 298410
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)