Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00173
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.78 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.6  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 228 CPHGGKLLFGSEPFLN 181
           CP    +LF S PFLN
Sbjct: 383 CPESDSILFVSSPFLN 398


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 503 YYVKNKDIRKFLDGLYVSEKT 565
           +Y  N+DI KFL+ L    KT
Sbjct: 308 FYPNNQDIEKFLNYLKRGGKT 328


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 36  KSESQNPRRAYGPCEIAS 89
           KS S +PR   GPC+  S
Sbjct: 880 KSPSPSPRPLVGPCKALS 897


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 298 YTARILYWKPLVTPLSCSLHVNRLSSRRQAPF 203
           YT ++L+  P +   SC + V      +Q  F
Sbjct: 129 YTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCF 160


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 328 LRVIQLLRYVTSW 366
           LR+ +L+RYV+ W
Sbjct: 220 LRLSRLVRYVSQW 232


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 328 LRVIQLLRYVTSW 366
           LR+ +L+RYV+ W
Sbjct: 220 LRLSRLVRYVSQW 232


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 328 LRVIQLLRYVTSW 366
           LR+ +L+RYV+ W
Sbjct: 220 LRLSRLVRYVSQW 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,232
Number of Sequences: 438
Number of extensions: 3483
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)