Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00173
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   103   7e-23
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   103   7e-23
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   103   9e-23
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   4.3  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   5.7  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   10.0 
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    27   10.0 

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  103 bits (248), Expect = 7e-23
 Identities = 49/81 (60%), Positives = 60/81 (74%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
           E++++GN +E VS S ALI Q
Sbjct: 146 EIVLDGNDIELVSRSCALINQ 166



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 34/84 (40%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
 Frame = +1

Query: 19  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
           + WFG++K  A++RT  SHV+N+I
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLI 84



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +2

Query: 506 YVKNKDIRKFLDGLYVSEKTTVVLDD 583
           +VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 169 HVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  103 bits (248), Expect = 7e-23
 Identities = 49/81 (60%), Positives = 60/81 (74%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
           E++++GN +E VS S ALI Q
Sbjct: 146 EIVLDGNDIELVSRSCALINQ 166



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 34/84 (40%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
 Frame = +1

Query: 19  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
           + WFG++K  A++RT  SHV+N+I
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLI 84



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +2

Query: 506 YVKNKDIRKFLDGLYVSEKTTVVLDD 583
           +VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 169 HVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  103 bits (247), Expect = 9e-23
 Identities = 50/81 (61%), Positives = 59/81 (72%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
           GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S K KD
Sbjct: 86  GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKD 145

Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
           E+I+EGN +E VS S ALI Q
Sbjct: 146 EIILEGNDIELVSRSCALINQ 166



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 36/84 (42%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
 Frame = +1

Query: 19  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
           + WFGS+K  A++RT  SHV+N+I
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLI 84



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = +2

Query: 506 YVKNKDIRKFLDGLYVSEKTTVVLDD 583
           +VK KDIRKFLDG+YVSEK  + +++
Sbjct: 169 HVKKKDIRKFLDGIYVSEKGKIAVEE 194


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 40  QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 183
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 454 PSMISS-SFCFGELTTVTPGAI 392
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 219 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 124
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 43  KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 153
           +VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,380,598
Number of Sequences: 28952
Number of extensions: 273584
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)