Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00172
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1060 - 25752181-25754229                                         29   4.2  
11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236     29   4.2  
03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670...    29   5.5  
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548...    28   9.6  
07_01_0563 + 4178176-4178295,4178391-4178834                           28   9.6  
07_01_0562 + 4175711-4175863,4175944-4176393                           28   9.6  

>12_02_1060 - 25752181-25754229
          Length = 682

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 341 FVVI*TVSYWLRMERARQHANIT 273
           FVV+  VS WL + R R+HA +T
Sbjct: 292 FVVVLGVSIWLLLHRRRKHAGLT 314


>11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236
          Length = 439

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 591 LHNIDKCAQDRRLILETFPLSNIDPFFLLYSQ 686
           LH + KC +DR +  ET P  + DP F  ++Q
Sbjct: 95  LHQLAKCRRDRLIDPETQPEESQDPRFRTFTQ 126


>03_02_0928 +
           12464325-12464498,12466494-12466679,12466929-12467021,
           12467212-12467394,12467506-12467608,12467695-12467865,
           12468086-12469084,12469178-12469254,12469485-12470337,
           12470878-12471000,12471526-12471878
          Length = 1104

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 304 WNERGSMRISHRGAEPNDTDSNAGEHHTNVLHVNN 200
           W+E  SM+IS      N+ D N G HH +   VNN
Sbjct: 376 WDEMSSMKISC-----NNQDENRGPHHLSKCLVNN 405


>11_01_0671 -
           5479240-5479286,5480399-5480588,5480669-5480824,
           5481005-5481931
          Length = 439

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 166 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVC 35
           G V  AG D A   LLGG + A+  + + GP  R ++ + L+ C
Sbjct: 277 GMVDNAGNDSAKCVLLGGLSEAKKLELIAGPEMR-IFRSDLRWC 319


>07_01_0563 + 4178176-4178295,4178391-4178834
          Length = 187

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 182 GCLTKLVVHMKDIGMVL--AGVGVGIVWFSSSV*YSHAASLVP 304
           G ++ L V     G +L  AG G G+ WF+++     AASLVP
Sbjct: 97  GFVSALAVEASRGGGLLEQAGSGDGLAWFAATATVLSAASLVP 139


>07_01_0562 + 4175711-4175863,4175944-4176393
          Length = 200

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 182 GCLTKLVVHMKDIGMVL--AGVGVGIVWFSSSV*YSHAASLVP 304
           G ++ L V     G +L  AG G G+ WF+++     AASLVP
Sbjct: 110 GFVSALAVEASRGGGLLEQAGSGGGLAWFAATAAVLSAASLVP 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,399,704
Number of Sequences: 37544
Number of extensions: 324446
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)