Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00172
(783 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13) 41 0.001
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10) 40 0.002
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 40 0.003
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 39 0.004
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 37 0.021
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 36 0.049
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 36 0.049
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.065
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 35 0.085
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 31 1.4
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2) 29 5.6
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 28 9.8
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 28 9.8
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = +2
Query: 2 KNVQKTIDIIQTDLQCCGINSPADW-------ADHGLPIPSTCCSAQEINDGVVAACTEN 160
+ + D IQ +CCGIN DW +H + +P +CC + ++ G EN
Sbjct: 404 EGITDAYDAIQKKEKCCGINGFKDWQRSYYTKGNHSI-VPDSCC--KTVSKGCGINFKEN 460
Query: 161 STNFHSKGCLTKLVVHMKDIGMVLAGVGVGI 253
+ ++KGC + +KD +++ G+G+G+
Sbjct: 461 --DIYTKGCFDTVKTLLKDNLIIIGGIGIGV 489
>SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13)
Length = 174
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +2
Query: 14 KTIDIIQTDLQCCGINS-PADWADH-----GLPIPSTCCSAQEINDGVVAACTENSTNFH 175
+ +D IQ LQCCG +S P DW ++ +P +CC + +T H
Sbjct: 85 RVVDSIQERLQCCGADSGPNDWMNNKHFLQSASVPDSCCKQEYREKDCGLGQIIANTRIH 144
Query: 176 SKGCLTKLVVHMKDIGMVLAGVGVGIV 256
++ C +K + D +AG G+ ++
Sbjct: 145 TEPCASKYKNMLDDKVDAIAGFGLAVL 171
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +2
Query: 11 QKTIDIIQTDLQCCGINSPADWAD-----HGLPIPSTCCSAQEINDGVVAACTENSTNFH 175
+K+I+ +QT +CCG ++ DW + +P +CC +++ GV ++ + +
Sbjct: 131 EKSINDMQTKFKCCGADNYTDWQSNIKMKNSSSVPDSCCKSEKAGCGV--GGVKDPKDIY 188
Query: 176 SKGCLTKLVVHMKDIGMVLAGVGVGIV 256
+KGC T + ++ + G+ + ++
Sbjct: 189 TKGCFTIIKGEIEKSLKPIGGLAIAVL 215
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +2
Query: 5 NVQKTIDIIQTDLQCCGINSPADW--ADH-GLP--IPSTCCSAQEINDGVVAACTENSTN 169
+ + +D +Q ++CCGI + DW +D+ GL +P +CC+ E + G+ + T
Sbjct: 237 SARNAVDDMQKTVKCCGITTYEDWKSSDNLGLTDNVPDSCCTTVEKDCGM--GQRKTPTR 294
Query: 170 FHSKGCLTKLVVHMKDIGMVLAGVG 244
+ +GC K+ KDI L VG
Sbjct: 295 IYKEGCYMKI---KKDIDNNLVAVG 316
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 2 KNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENS 163
+N Q ID +QT+L+CCG+NS DW + I C S + GV +C + S
Sbjct: 156 ENFQFLIDRLQTNLKCCGVNSYTDWQTN---IYFNCSSPGSESCGVPFSCCKES 206
>SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10)
Length = 691
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/86 (30%), Positives = 40/86 (46%)
Frame = +2
Query: 2 KNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSK 181
K +K +D +Q + +CCG D DHG N V +C + + SK
Sbjct: 449 KEYKKAMDKVQGEFKCCGYE---DSNDHGYK-----------NSTVPKSCKDTNGTVFSK 494
Query: 182 GCLTKLVVHMKDIGMVLAGVGVGIVW 259
C+ L +KD +V+ GVG+GI +
Sbjct: 495 NCVKGLEKFLKDHLIVVGGVGIGIAF 520
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 2 KNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENS 163
+N Q ID +QT+L+CCGINS DW + + C S + GV +C + S
Sbjct: 156 ENFQFLIDRLQTNLKCCGINSYNDWQTN---VYFNCSSPGSESCGVPFSCCKES 206
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +2
Query: 2 KNVQKTIDIIQTDLQCCGINSPADWADHG----LPIPSTCCSAQEINDGVVAACTENS 163
KN + ID +Q D +CCG P+DW +G P +CC ND + T NS
Sbjct: 481 KNNKAAIDAMQMDFECCGAKGPSDWTFYGQMKYKAGPGSCCGKPN-NDACLPG-TRNS 536
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 11 QKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTNFH 175
Q ID +QT L+CCG+ S DW + C S ++ GV +C + S F+
Sbjct: 156 QDLIDFMQTLLKCCGVESYKDWQANPY---FNCSSPGRMSCGVPFSCCKESIQFN 207
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 35.5 bits (78), Expect = 0.049
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Frame = +2
Query: 29 IQTDLQCCGINSPADW---------ADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSK 181
+Q +L+CCG + DW +G +P +CC ++ + + T +
Sbjct: 276 MQKNLKCCGSRNYTDWFMVAWAGPNTKNG-SVPESCCKDTKVKSCNLEVLSHPETINSEQ 334
Query: 182 GCLTKLVVHMKDIGMVLAGVGVGIVWF 262
GC V + +D +++ GV +G+ F
Sbjct: 335 GCYGAAVKYFEDKLVIIGGVALGLAVF 361
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 35.5 bits (78), Expect = 0.049
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Frame = +2
Query: 8 VQKTIDIIQTDLQCCGINSPADWAD------HGLPIPSTCC---SAQEINDGVVAACTEN 160
V + ID I D +CCG DW + H +P +CC S + N+ + +++
Sbjct: 139 VTRAIDEIHRDFKCCGNAQYRDWFETKWAKTHPDMVPRSCCKDPSDSKCNENI----SKD 194
Query: 161 STNFHSKGCLTKLVVHMKDIGMVLAGVGVGI 253
T + +GC + ++ + V++G G+ I
Sbjct: 195 PTKIYRRGCYMFVKKYLSNNLHVISGFGIWI 225
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 35.1 bits (77), Expect = 0.065
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 20 IDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSK---GCL 190
ID +QT+LQCCG+ DW + I C GV +C + + G
Sbjct: 188 IDTVQTELQCCGVQGLNDWDAN---IYFNCSGPARERCGVPYSCCRKDLQENRQCGYGAR 244
Query: 191 TKLVVHMKDIGMVLAG-VGVGIVWFSSSV 274
+ K+ G+ G V GI W ++++
Sbjct: 245 SVPTSQAKENGIFTEGCVKTGIAWINTNL 273
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 34.7 bits (76), Expect = 0.085
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +2
Query: 11 QKTIDIIQTDLQCCGINSPADWADH-----GLPIPSTC 109
Q+ ID IQT +CCGI S DW + P+P+ C
Sbjct: 151 QEFIDFIQTRFKCCGIESYKDWQANRYFSCSSPVPTAC 188
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 33.9 bits (74), Expect = 0.15
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Frame = +2
Query: 5 NVQKTIDIIQTDLQCCGINSPADW-----------ADHGLPIPSTCCSAQEIND----GV 139
++Q ID IQ++L+CCG S DW A +P +CC +IN GV
Sbjct: 65 DLQNAIDGIQSNLKCCGGYSYHDWNHNKYFNCSAQAVEACGVPHSCCVEDQINTQCGFGV 124
Query: 140 --VAACTENSTNFHSKGCLTKLVVHMKDIGMVLAGVGVG 250
+ E S+ + +GC+ L M + ++ G+ G
Sbjct: 125 RREKSVLEASSVIYVRGCVDSLSDWMVENLHIIGGLAFG 163
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = +2
Query: 8 VQKTIDIIQTDLQCCGINSPADWA-----DHGLPIPSTCC 112
V K D +Q +CCG+N DW + +P +CC
Sbjct: 146 VTKAFDALQEKQKCCGVNGYLDWKASKKYNGTSTVPDSCC 185
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 18/101 (17%)
Frame = +2
Query: 5 NVQKTIDIIQTDLQCCGINSPADW-----------ADHGLPIPSTCCSAQEIND--GVVA 145
++Q ID +Q + +CCG DW +P +CC IN G
Sbjct: 124 DLQNLIDGVQQEFKCCGAKGINDWDKNIYFNCSSPGSEACGVPYSCCIKDTINRQCGYGI 183
Query: 146 ACTENSTNFHSK-----GCLTKLVVHMKDIGMVLAGVGVGI 253
+ T+ SK GC+ + K +++ G VGI
Sbjct: 184 RKSGTPTSDQSKIIFIGGCVNAVKDWFKSNMIIIGGAAVGI 224
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Frame = +2
Query: 41 LQCCGINSPADW--------ADHGLPIPSTCCSAQEINDGVVAACTENST--NFHSKGCL 190
L+CCG P DW + +P +CC+ + N C ++ T +S GC+
Sbjct: 346 LKCCGGERPGDWLGSKWKRDLNKDKIVPLSCCT-ENANK---TTCYKDDTYKEVYSSGCV 401
Query: 191 TKLVVHMKDIGMVLAGVGVGI 253
+L + +++ + VGI
Sbjct: 402 NELKTFVDKHMILIGAIAVGI 422
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 660 RYSRE-ERFLKSVFCPEHTCQCCAIV 586
R+S E ERF V+CP C CC+ V
Sbjct: 925 RFSPEGERFNSFVYCPGIDCLCCSTV 950
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 694 NKCCEYKRKNGSIFERGKVSKISLLS*AHLSMLCNCTFNYY 572
N C +YKR+ ++G+ ++I L AHL ++ YY
Sbjct: 410 NDCTQYKREKEGTMDKGQRARIDQLLNAHLELVWQERRVYY 450
>SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)
Length = 108
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 5 NVQKTIDIIQTDLQCCGINSPADW 76
++Q ID IQ + +CCG +S DW
Sbjct: 56 DLQNIIDGIQENFKCCGSSSINDW 79
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 280 ISHRGAEPNDTDSNAGEHHTNVLHVNNQFSKTSLRVEVGRVLGAGRDDA 134
++ R AE + + A E+H V HV + F+ V+ V G D A
Sbjct: 2992 LNKREAELSVVEQAAEEYHVTVAHVEDVFASAYDAVDAPAVFGTDTDHA 3040
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 5 NVQKTIDIIQTDLQCCGINSPADW 76
+++ +D IQ +L+CCG DW
Sbjct: 176 SIRDDLDSIQKNLKCCGFKDYNDW 199
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 360 MIKPLLIRITKFNSISLPTYI*CLNVYCDKC 452
+I+ I I+K + +P + C + YCD C
Sbjct: 388 IIQTFSIEISKTKKVHIPLLLECGHTYCDSC 418
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,837,602
Number of Sequences: 59808
Number of extensions: 379138
Number of successful extensions: 1152
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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