Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00172
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical pr...    38   0.011
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    36   0.033
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    33   0.23 
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    33   0.23 
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z73908-1|CAA98130.2|  230|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL021487-1|CAA16352.4|  241|Caenorhabditis elegans Hypothetical ...    29   2.8  
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    28   6.6  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   6.6  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   6.6  

>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
 Frame = +2

Query: 5   NVQKTIDIIQTDLQCCGINSPADW-----ADHGLP-----------IPSTCCSAQEINDG 136
           N+ K ++ +Q D +CCG N+  DW      DH LP           IP +CC +     G
Sbjct: 145 NIAKAVNYLQRDSKCCGSNAFNDWPKPEVEDHYLPYAKTVVQRVQYIPDSCCKSTHQRKG 204

Query: 137 VVAACTENSTNFHSKGCL 190
              A +++  N   +GCL
Sbjct: 205 --CALSDSPNNIFYRGCL 220


>Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical
           protein C50H2.6 protein.
          Length = 205

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 92  PIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLV 202
           P+P+T CSA  I++  V +C   ST  H+K  L+K V
Sbjct: 96  PLPATFCSAASIDNNAVKSCKNKSTTLHAKILLSKEV 132


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
 Frame = +2

Query: 17  TIDIIQTDLQCCGINSPADWA-----DHGLPIPSTCCSAQEIN-DGVVAAC---TENSTN 169
           T D +Q +LQCCG+++  DW       + L  P +CC  Q  + +     C    +  + 
Sbjct: 136 TWDHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFDAENGTENCGKLPDEQSL 195

Query: 170 FHSKGCLTK 196
            + KGC  K
Sbjct: 196 LYQKGCFPK 204


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +2

Query: 2   KNVQKTIDIIQTDLQCCGINSPAD-WADHGLPIPSTCCSA--QEINDGVVAACTENSTNF 172
           +N+ + +D +Q +L+CCG++S A  + D  +     C ++  Q    GV  +C   S   
Sbjct: 152 RNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFSCCRKSVIS 211

Query: 173 HSKGCLTKLVVHMKDI 220
            + G    L+  M+ +
Sbjct: 212 EAAGSSNPLLPAMRSL 227


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +2

Query: 2   KNVQKTIDIIQTDLQCCGINSPAD-WADHGLPIPSTCCSA--QEINDGVVAACTENSTNF 172
           +N+ + +D +Q +L+CCG++S A  + D  +     C ++  Q    GV  +C   S   
Sbjct: 176 RNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFSCCRKSVIS 235

Query: 173 HSKGCLTKLVVHMKDI 220
            + G    L+  M+ +
Sbjct: 236 EAAGSSNPLLPAMRSL 251


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/80 (20%), Positives = 32/80 (40%)
 Frame = +2

Query: 2   KNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSK 181
           + V+   D      +CCG+ + +DW      IP +CC  +      +  C   +      
Sbjct: 129 RGVESAWDKTHQLFECCGVTNSSDWLTF-TTIPDSCCIEE------IEGCARENAPLFEP 181

Query: 182 GCLTKLVVHMKDIGMVLAGV 241
           GC+  +   +   G ++ G+
Sbjct: 182 GCIHSVEQWVLKNGAMVGGI 201



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 259 VQLLGVIFACCLARSIRSQY 318
           +QL+GV FACCL++SI   +
Sbjct: 208 IQLVGVCFACCLSKSILKDF 227


>Z73908-1|CAA98130.2|  230|Caenorhabditis elegans Hypothetical
           protein F53B2.2 protein.
          Length = 230

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 11  QKTIDIIQTDLQCCGINSPADWADHGLPIPSTC 109
           + T+D + T L+CCG N   D+   G   P++C
Sbjct: 134 KNTLDWVHTSLKCCGANGCEDFLPAG-NFPTSC 165


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 5   NVQKTIDIIQTDLQCCGINSPADW-ADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSK 181
           ++Q  ID +Q    CCGIN   DW  +    I +   ++ E   GV  +C  NS+    K
Sbjct: 162 DLQLLIDSMQETWMCCGINGADDWDRNTYFSIEAREVASPEAG-GVPFSCCINSSKLEFK 220


>AL021487-1|CAA16352.4|  241|Caenorhabditis elegans Hypothetical
           protein Y45F10B.1 protein.
          Length = 241

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 11  QKTIDIIQTDLQCCGINSPADWADHGLPIPSTC 109
           + T+D + T L+CCG N   D+   G   P++C
Sbjct: 145 KNTLDWVHTSLKCCGANGCEDFLPAG-NFPTSC 176


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 8   VQKTIDIIQTDLQCCGINSPADWADHGLPIPSTC 109
           VQ+++D +QT  +CCG    +D+      IP +C
Sbjct: 193 VQESLDHLQTAFRCCGNAGCSDFRVFRQDIPRSC 226


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 298 ERGSMRISHRGAEPNDTDSNAGEHHTNVLHVNNQFSKTSLRVE 170
           +R   R+   G    +    +GEHH    H +NQ S   +R++
Sbjct: 363 QRSHRRLLETGPSVEENPMRSGEHHPLCRHTHNQDSCRRVRIQ 405


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
 Frame = +2

Query: 2   KNVQKTIDIIQTDLQCCGIN--------SPADWADH----GLPIPSTCCSAQEI 127
           K + ++ D +Q++ +CCG+N          + W  H     L IP +CC   EI
Sbjct: 142 KGITESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAPKLLIPESCCIPSEI 195


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 298 ERGSMRISHRGAEPNDTDSNAGEHHTNVLHVNNQFSKTSLRVE 170
           +R   R+   G    +    +GEHH    H +NQ S   +R++
Sbjct: 363 QRSHRRLLETGPSVEENPMRSGEHHPLCRHTHNQDSCRRVRIQ 405


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 298 ERGSMRISHRGAEPNDTDSNAGEHHTNVLHVNNQFSKTSLRVE 170
           +R   R+   G    +    +GEHH    H +NQ S   +R++
Sbjct: 363 QRSHRRLLETGPSVEENPMRSGEHHPLCRHTHNQDSCRRVRIQ 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,258
Number of Sequences: 27780
Number of extensions: 298784
Number of successful extensions: 866
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)