Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00172
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    52   5e-09
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 52.4 bits (120), Expect = 5e-09
 Identities = 29/78 (37%), Positives = 45/78 (57%)
 Frame = +2

Query: 20  IDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKL 199
           ID IQ +LQCCG++S +D+ D   PIP++CC++ E N       T + +N ++ GC+  L
Sbjct: 136 IDFIQKNLQCCGVHSLSDYNDK--PIPASCCNSPENN-------TCSISNSYTNGCVEAL 186

Query: 200 VVHMKDIGMVLAGVGVGI 253
              +K  G V   V + I
Sbjct: 187 KDTVKLAGTVFGSVAIAI 204



 Score = 26.6 bits (56), Expect = 0.26
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 256 LVQLLGVIFACCLARSIRS 312
           +V+L+G+I A CLA SI++
Sbjct: 206 IVELIGIICALCLANSIKN 224


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 272 PRS*TKRYRLQRRRAPYQCPSCEQ 201
           P   T+ YR      PYQC  C +
Sbjct: 104 PARLTRHYRTHTGEKPYQCEYCSK 127



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 248 RLQRRRAPYQCPSCEQ 201
           R+  +  PY+C  CE+
Sbjct: 140 RIHTKERPYKCDVCER 155


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 81  SAQSAGLFIPQHCKSVCMISIVFWT 7
           S+QSA + I +   ++C + ++ WT
Sbjct: 264 SSQSAEIRIAKAAITICFLYVLSWT 288


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 652 ERGKVSKISLLS*AHLSMLCNCTFNYYSKTN 560
           ER K  KI     + LS  CN + NYY+  N
Sbjct: 296 ERSKEPKII----SSLSNSCNYSNNYYNNNN 322


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 136  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 38
            A+ID L  A R        GP GR+V +A L V
Sbjct: 967  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 999


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 136  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 38
            A+ID L  A R        GP GR+V +A L V
Sbjct: 963  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 995


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,168
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)