Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00172
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57900.1 68418.m07243 SKP1/ASK1 interacting partner 1 (SKIP1)...    30   1.5  
At1g27660.1 68414.m03381 ethylene-responsive protein -related co...    28   6.1  

>At5g57900.1 68418.m07243 SKP1/ASK1 interacting partner 1 (SKIP1) /
           SCF (Skp1-cullin-F-box) ubiquitin ligase identical to
           SKP1 interacting partner 1 GI:10716947 from [Arabidopsis
           thaliana], PMID:11387208
          Length = 300

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = -3

Query: 307 EWNER--GSMRISHRGAEPNDTDSNA---GEHHTNVLHVNNQFSKTSLR 176
           +W+ R  GS+   +  A P D D+ A   G+H  N+ H+  QFS+ S++
Sbjct: 175 DWSSRHIGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVK 223


>At1g27660.1 68414.m03381 ethylene-responsive protein -related
           contains similarity to ethylene-inducible ER33 protein
           [Lycopersicon esculentum] gi|5669656|gb|AAD46413
          Length = 453

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +2

Query: 35  TDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLVVH 208
           +D  C G +S   W+  G+ + S   S    N+ +      N+ N ++  C++   +H
Sbjct: 29  SDPSCYGASSAHQWSPGGISLNSVSLSHNYNNEMLNTRAHNNNNNNNTSECMSLSSIH 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,435
Number of Sequences: 28952
Number of extensions: 264292
Number of successful extensions: 693
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)