Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00171
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    29   0.92 
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.1  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    27   2.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.7  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    26   4.9  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   6.5  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 300 QLKRKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTR 407
           +L R+L+    S+ P++AP+  SS ++ + DE+  R
Sbjct: 21  ELARRLQDEWNSSSPSSAPSSSSSQNQVELDEQFAR 56


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 92  SEKLFPNVRLTKYVPPLHS-LPADFPDSAAEMSAELRK-QESLLSQIHAEMHA 244
           S+ L  N R     PPLHS L   F    AE    +R+  ++LL Q++ EM A
Sbjct: 21  SDALLQNTRTLFTAPPLHSGLQTSF---TAETQQHVRQNSQNLLKQLNDEMKA 70


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 167 DSAAEMSAELRKQESLLSQIHAE 235
           +S +  S ++RKQES+L +IHA+
Sbjct: 242 NSNSVSSTKIRKQESILEKIHAQ 264


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +1

Query: 211 SSQSDP--RGDARRLHKAARD 267
           +S +DP   G ARRLHKAAR+
Sbjct: 764 NSNNDPSANGAARRLHKAARE 784


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 273 ALGGARIVTQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQ 419
           A+G  +  T++K+K  S+ K  +    P +  S   K+    T+ GSS+
Sbjct: 2   AIGKRKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSE 50


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 333 STEPNAAPTQQSSVDEKQPDEET 401
           S++PN APT   ++   QP+  T
Sbjct: 351 SSKPNEAPTSSENIKADQPENST 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,367
Number of Sequences: 5004
Number of extensions: 29780
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)