Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00171
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0173 + 1190846-1191134,1191235-1191557,1191645-1191958,119...    30   2.2  
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312     29   3.9  
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334     28   9.0  
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153...    28   9.0  

>02_01_0173 +
           1190846-1191134,1191235-1191557,1191645-1191958,
           1192302-1192461
          Length = 361

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 246 AS*GRQRPTALGGARIVTQLKRKLRSVQKSTEPNAAPTQQSSV 374
           +S G++R   +GG R+V++ KRKL     S +P     Q +S+
Sbjct: 125 SSEGKKRKRKVGGIRLVSKKKRKLLPFNPSDDPARRLRQMASL 167


>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
          Length = 232

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 182 MSAELRKQESLLSQIHAEMHAGFIRPPETNSSGRRTN 292
           M  EL+K E  ++ IH EM     R  E     RRTN
Sbjct: 161 MEVELKKLEDTINSIHEEMFYLRAREEEMQELNRRTN 197


>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
          Length = 664

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 439 GFSASVGCELPRVVSSSGCFSSTDDCCVGAALGSVDFCTERSLRLS--CVTIRAPPRAVG 266
           GF+   GC      S+SG  S   +CC G       FC+++S+ L+   V++     AV 
Sbjct: 268 GFAHGTGCSKGTSCSNSGQASDGRECCQGR------FCSKKSVALAGFFVSLFFLAAAVS 321

Query: 265 LW 260
            W
Sbjct: 322 FW 323


>01_06_1113 +
           34613668-34614075,34614781-34614970,34615264-34615372,
           34615822-34615912,34615948-34616076,34616306-34616804,
           34617154-34617251
          Length = 507

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 179 EMSAELRKQESLLSQIHAEMHAGFIRPPETNSSGRRTNCNTTQA*TSFGTKVN 337
           E+   L KQ+ L  ++  E+  G++   E   +GRR+N  T +    FG + +
Sbjct: 310 ELKEVLEKQKELGFEL-PELPPGYLSEHEDQGNGRRSNWKTQRRDCRFGNRAD 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,007
Number of Sequences: 37544
Number of extensions: 226262
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)