Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00171
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42) 31 0.98
SB_1476| Best HMM Match : RVT_1 (HMM E-Value=5.49309e-43) 29 5.2
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.9
SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59) 28 6.9
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.9
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 28 6.9
SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 28 6.9
SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6) 28 6.9
SB_22046| Best HMM Match : PPV_E1_N (HMM E-Value=0.61) 28 6.9
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 28 9.1
SB_23300| Best HMM Match : PT (HMM E-Value=1.2) 28 9.1
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 28 9.1
>SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)
Length = 737
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 403 VVSSSGCFSSTDDCCVGAALGSVDF 329
V+ SGC S DDC G+ +VDF
Sbjct: 4 VIDGSGCDSDDDDCASGSGKNTVDF 28
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 403 VVSSSGCFSSTDDCCVGAALGSVDF 329
V+ SGC S DDC G+ +VDF
Sbjct: 33 VIDGSGCDSDDDDCASGSGKNTVDF 57
>SB_1476| Best HMM Match : RVT_1 (HMM E-Value=5.49309e-43)
Length = 1078
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 122 TKYVPPLHSLPADFPDSAAEMSAE-LRKQE 208
T+ +PPL +LP D P A +MS + L QE
Sbjct: 144 TETIPPLETLPIDQPAPAGDMSTDNLHLQE 173
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 291 IVTQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPD 392
++TQ KRK ++ + +T NAA ++ S E++PD
Sbjct: 1733 VITQPKRKTKTRKPATR-NAAELKEESSSEEEPD 1765
>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
Length = 421
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 291 IVTQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPD 392
++TQ KRK ++ + +T NAA ++ S E++PD
Sbjct: 177 VITQPKRKTKTRKPATR-NAAELKEESSSEEEPD 209
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 294 VTQLKRKL-RSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQ 419
V++ ++ L RS + + E PT + SV E P+EE T S+
Sbjct: 3067 VSEREKSLERSAENTPEKEEIPTDEESVVEDLPEEELTLEESE 3109
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 291 IVTQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPD 392
++TQ KRK ++ + +T NAA ++ S E++PD
Sbjct: 1006 VITQPKRKTKTRKPATR-NAAELKEESSSEEEPD 1038
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 291 IVTQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPD 392
++TQ KRK ++ + +T NAA ++ S E++PD
Sbjct: 550 VITQPKRKTKTRKPATR-NAAELKEESSSEEEPD 582
>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
Length = 754
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 330 KSTEPNAAPTQQSSVDEKQPDEETTRGSSQP 422
+ T+P++ +S D+ PDE + RG ++P
Sbjct: 360 RMTQPDSRNVSSTSRDKSSPDESSARGFTRP 390
>SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 291 IVTQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPD 392
++TQ KRK ++ + +T NAA ++ S E++PD
Sbjct: 177 VITQPKRKTKTRKPATR-NAAELKEESSSEEEPD 209
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 264 RPTALGGARIVTQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQPT 425
+PT G + V ++ S + + N AP ++S + E TTR + PT
Sbjct: 909 KPTHYKGTKEVPKISSSHGSHETTPHINGAPVSKTSNSTQNSTEATTRKTGTPT 962
>SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6)
Length = 311
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 291 IVTQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPD 392
++TQ KRK ++ + +T NAA ++ S E++PD
Sbjct: 70 VITQPKRKTKTRKPATR-NAAELKEESSSEEEPD 102
>SB_22046| Best HMM Match : PPV_E1_N (HMM E-Value=0.61)
Length = 362
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 306 KRKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQPTEAEK 437
KR + + S N P ++ D KQP +TTR S P E K
Sbjct: 311 KRPVHEYELSPTSNKKPKKEPPGDTKQPKSKTTR-PSPPREKTK 353
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 327 QKSTEPNAAPTQQSSVDEKQPDEETTRGSSQPT 425
Q + +P PT Q++ QP++ T + QPT
Sbjct: 247 QPTNQPTNQPTNQTNQPTNQPNQPTNLPTDQPT 279
>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 583
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 240 TPAS*GRQRPTALGGARIVTQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPDEETT 404
T A+ RQR RIV + +L KS + + ++E++P+EE T
Sbjct: 382 TRAAKRRQRVATFSKGRIVNKRSSRLVPRVKSMRITRGKSHEGRLEEERPEEERT 436
>SB_23300| Best HMM Match : PT (HMM E-Value=1.2)
Length = 85
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 354 PTQQSSVDEKQPDEETTRGSSQPTEAE 434
PT++ + + +P EE T + +PTE E
Sbjct: 10 PTEEETAEGDEPTEEETAKADEPTEEE 36
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 125 KYVPPLHSLPADFPDSAAEMSAELRKQESLLSQIHAEMHA 244
+YV PL+S P D + MS+ + +L I A HA
Sbjct: 475 RYVIPLNSQPTDTQRHPSGMSSHSTLNQQILKDIQAVCHA 514
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,775
Number of Sequences: 59808
Number of extensions: 241176
Number of successful extensions: 935
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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