Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00171
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    29   4.6  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   4.6  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       28   6.0  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    28   6.0  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    28   6.0  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   6.0  

>Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical
           protein T23G4.4 protein.
          Length = 689

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +2

Query: 74  TYLVTKSE--KLFPNVRLTKYVPPLHSLPADFPDSAAEMSAELRKQESLLSQIHAEMH-- 241
           TYL  +S+  K+ PN++   ++  L S+P   P+    ++  L+++   + +I+  ++  
Sbjct: 557 TYLEMRSQLRKMLPNIKKKIFI--LDSIPRVHPEQIDTIAKNLKRKRKTMEEINKSLYNP 614

Query: 242 AGFIRPPETNSSGRRTNCNT 301
           +GF R    ++      CN+
Sbjct: 615 SGFERGRRRHAELLEKECNS 634


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 297 TQLKRKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQPTEAE 434
           T+LKR + S  + ++  A   ++   DE++P+E+     +   E E
Sbjct: 388 TELKRVVLSDGEDSDEEAEEAEEEGDDEEEPEEDDIESENDEAETE 433


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 300 QLKRKLRS-VQKSTEPNAAPTQQSSVDEKQPDEETTR 407
           +L+++ R  ++KST P A P  + + DE++  EE  R
Sbjct: 554 ELRQRARDLIEKSTTPAATPNSRKASDEERRREEVRR 590


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 300 QLKRKLRS-VQKSTEPNAAPTQQSSVDEKQPDEETTR 407
           +L+++ R  ++KST P A P  + + DE++  EE  R
Sbjct: 554 ELRQRARDLIEKSTTPAATPNSRKASDEERRREEVRR 590


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 309  RKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQP 422
            RK    +K  + N AP QQ+ V    P EET   +  P
Sbjct: 2794 RKNSKGEKKVKENTAPVQQAPVPVSPPREETPEPTPSP 2831


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 309  RKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQPTEAEK 437
            +K +S +K+ E  A+PT+++  + K P E   +  + PT+ EK
Sbjct: 1381 KKEKSPEKTEEKPASPTKKTGEEVKSPKE---KSPASPTKKEK 1420


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 309  RKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQPTEAEK 437
            +K +S +K+ E  A+PT+++  + K P E   +  + PT+ EK
Sbjct: 1381 KKEKSPEKTEEKPASPTKKTGEEVKSPKE---KSPASPTKKEK 1420


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 309  RKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQPTEAEK 437
            +K +S +K+ E  A+PT+++  + K P E   +  + PT+ EK
Sbjct: 1381 KKEKSPEKTEEKPASPTKKTGEEVKSPKE---KSPASPTKKEK 1420


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 309  RKLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQPTEAEK 437
            +K +S +K+ E  A+PT+++  + K P E   +  + PT+ EK
Sbjct: 1381 KKEKSPEKTEEKPASPTKKTGEEVKSPKE---KSPASPTKKEK 1420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288,608
Number of Sequences: 27780
Number of extensions: 179398
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)